Hg_chrom1_TN10mRNA_1822
Organism: Heterodera glycines Gene Locus: chr1:15667490-15670254 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.354 | 1.073 | 0.519 | 0.455 | 0.22 | 0.564 | 0.733 | 0.659 | 1.465 | 1.812 | 0.5 | 1.81 | 1.709 | 0.93 | 0.538 | 1.256 | 0.901 | 1.199 | 2.198 | 1.034 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1748
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.076
|
0.203
|
0.016
|
0.169
|
0.207
|
0.306
|
0.210
|
0.021
|
0.401
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006387
|
1.000
|
1.000
|
Hsc_gene_12879.t1
|
Hsc_gene_12879.t1;Hsc_gene_12879.t2
|
— |
P94575.1 Allantoin permease [Bacillus subtilis subsp. subtilis str. 168]
|
KAI1710738.1 permease for cytosine/purine, uracil, thiamine, allantoin domain-containing protein [Ditylenchus destructor]
|
WP_091183461
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.944|GO:0005575_0.858|GO:0110165_0.854|GO:0006810_0.807|GO:0051179_0.807|GO:0051234_0.807|GO:0016020_0.796|GO:0009987_0.754|GO:0003674_0.750|GO:0071705_0.718|GO:0055085_0.682|GO:0071944_0.673|GO:0005215_0.650|GO:0022857_0.650|GO:0005886_0.598|GO:0005622_0.579|GO:0005737_0.579|GO:0043226_0.519|GO:0043227_0.516|GO:0043229_0.509|GO:0043231_0.507
|
IPR001248+27-444+|IPR045225+12-444+
|
— |
PF02133+27-444+Permease_for_cytosine/purines,_uracil,_thiamine,_allantoin
|
— |
PTHR30618+12-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-455
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
49572.350
|
9.179
|
11.000
|
11.429
|
13.846
|
32.527
|
67.473
|
7.253
|
4.176
|
53.626
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
lightyellow
|
496.854
|
159.479
|
170.589
|
99.406
|
121.514
|
1228.295
|
812.293
|
164.300
|
18.857
|
1126.142
|
651.591
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.819
|
-0.672
|
0.258
|
3.355
|
— |
-3.016
|
2.449
|
-6.002
|
— |
-2.816
|
— | — |
No JSON data available for plots.