Hg_chrom1_TN10mRNA_1825
Organism: Heterodera glycines Gene Locus: chr1:15675912-15676576 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.48 | 1.48 | 0.331 | 0.0 | 1.212 | 1.399 | 0.325 | 0.909 | 1.01 | 1.474 | 0.275 | 2.139 | 0.758 | 0.699 | 3.154 | 0.649 | 1.192 | 0.689 | 0.0 | 0.802 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1751
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKPHRYRPGTVARREIRR
|
14-39
|
0.903
|
— | — | — | — |
0.000
|
— | — |
0.758
|
0.167
|
0.119
|
0.488
|
0.052
|
0.020
|
0.028
|
0.002
|
0.063
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001734
|
2.000
|
2.000
|
Hsc_gene_12860.t1;Hsc_gene_12882.t1
|
Hsc_gene_12860.t1;Hsc_gene_12882.t1;Hsc_gene_12903.t1
|
— |
P06352.2 Histone H3, embryonic [Strongylocentrotus purpuratus]
|
XP_012420631.1 PREDICTED: histone H3.3-like isoform X2 [Odobenus rosmarus divergens]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.901|GO:0110165_0.882|GO:0005622_0.802|GO:0043226_0.761|GO:0043229_0.751|GO:0016020_0.730|GO:0043227_0.630|GO:0043231_0.615|GO:0008150_0.542|GO:0043228_0.533|GO:0043232_0.533
|
IPR000164+7-108_8-29_8-110_32-49_41-49_54-72_72-88_88-109+|IPR007125+6-106+|IPR009072+1-109_7-107+
|
SM00428+8-110+
|
PF00125+6-106+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000085+12-110+Histone_H3.2
|
PTHR11426+7-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;110-110
|
1.000
|
27-109
|
8pep_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
12708.600
|
11.867
|
10.000
|
28.182
|
7.273
|
51.818
|
48.182
|
19.091
|
9.091
|
43.636
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
472.816
|
1.673
|
3.011
|
7.474
|
60.761
|
1249.068
|
43.960
|
1674.055
|
1.382
|
927.534
|
530.612
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.018
|
1.425
|
2.992
|
4.374
|
-4.816
|
— |
-5.100
|
-9.638
|
— | — | — | — |
No JSON data available for plots.