Hg_chrom1_TN10mRNA_1826
Organism: Heterodera glycines Gene Locus: chr1:15679092-15682013 Feature type: polypeptideProtein Sequence
Length: 420
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.08 | 1.274 | 0.476 | 0.657 | 1.508 | 1.404 | 0.567 | 0.595 | 0.899 | 1.062 | 1.335 | 2.241 | 1.852 | 0.458 | 1.312 | 0.782 | 0.703 | 0.866 | 1.282 | 0.91 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1752
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRKR,RRRRTTGGGRSSTSSRRRSRGWPWEGAARR
|
— | — | — | — |
1-19
|
0.993
|
1.000
|
0.000
|
0.000
|
0.454
|
0.164
|
0.006
|
0.355
|
0.108
|
0.097
|
0.195
|
0.014
|
0.257
|
0.545
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006390
|
1.000
|
1.000
|
Hsc_gene_12883.t1
|
Hsc_gene_12883.t1;Hsc_gene_12883.t2
|
— | — | — |
EJB6606490
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
380-420
|
1.000
|
1-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
48621.020
|
9.701
|
17.500
|
28.095
|
12.619
|
48.810
|
51.190
|
16.429
|
11.667
|
41.905
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
177.315
|
14.714
|
34.214
|
291.439
|
161.083
|
28.025
|
49.098
|
14.081
|
270.529
|
350.610
|
316.289
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.985
|
4.167
|
3.206
|
-0.886
|
-2.509
|
0.821
|
-1.107
|
1.948
|
— | — | — | — | — |