Hg_chrom1_TN10mRNA_1828
Organism: Heterodera glycines Gene Locus: chr1:15687755-15691356 Feature type: polypeptideProtein Sequence
Length: 596
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.151 | 0.78 | 0.976 | 0.347 | 1.063 | 1.076 | 0.799 | 1.174 | 1.156 | 1.383 | 0.814 | 1.283 | 1.724 | 1.452 | 0.856 | 0.887 | 0.935 | 0.559 | 1.291 | 0.74 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1754
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.498
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-28
|
0.997
|
1.000
|
0.000
|
0.000
|
0.098
|
0.343
|
0.038
|
0.303
|
0.914
|
0.203
|
0.182
|
0.200
|
0.247
|
0.541
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003095
|
1.000
|
2.000
|
Hsc_gene_12885.t1;Hsc_gene_22423.t1
|
Hsc_gene_12885.t1;Hsc_gene_12886.t1
|
— |
Q04456.1 Gut esterase 1 [Caenorhabditis briggsae]
|
KAF7632864.1 COesterase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.817|GO:0005575_0.770|GO:0003674_0.768|GO:0110165_0.766|GO:0009987_0.731|GO:0016020_0.624|GO:0003824_0.549|GO:0043226_0.524|GO:0005622_0.506|GO:0065007_0.502
|
IPR002018+34-570+|IPR019826+216-231+|IPR029058+18-577_33-573+|IPR050309+16-583+
|
— |
PF00135+34-570+Carboxylesterase_family
|
— |
PTHR11559+16-583+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
585-596
|
1.000
|
1-584
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
66195.490
|
5.770
|
-6.000
|
23.658
|
12.752
|
43.121
|
56.879
|
11.913
|
11.745
|
49.497
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
2513.183
|
268.285
|
1165.838
|
746.089
|
1294.438
|
3834.448
|
11196.833
|
1131.292
|
250.393
|
3443.420
|
2074.980
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.893
|
1.339
|
-0.537
|
0.762
|
1.583
|
1.555
|
-1.876
|
3.452
|
-3.910
|
— | — | — | — |