Hg_chrom1_TN10mRNA_1830
Organism: Heterodera glycines Gene Locus: chr1:15694948-15695689 Feature type: polypeptideProtein Sequence
Length: 108
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.184 | 0.861 | 0.673 | 1.277 | 1.08 | 0.237 | 0.882 | 1.852 | 1.235 | 1.376 | 0.982 | 2.179 | 1.543 | 0.534 | 1.323 | 0.794 | 1.063 | 0.842 | 0.0 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1756
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.159
|
0.853
|
0.054
|
0.368
|
0.059
|
0.063
|
0.029
|
0.066
|
0.124
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006392
|
1.000
|
1.000
|
Hsc_gene_12887.t1
|
Hsc_gene_12887.t1
|
— |
Q5R833.1 Acyl-coenzyme A thioesterase 13 [Pongo abelii]
|
KAI1710015.1 thioesterase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0047617
|
GO:0005575_0.918|GO:0008150_0.911|GO:0110165_0.901|GO:0016020_0.802|GO:0005622_0.801|GO:0005737_0.774|GO:0043226_0.767|GO:0043229_0.740|GO:0043227_0.716|GO:0043231_0.711|GO:0009987_0.523
|
IPR003736+32-98+|IPR006683+55-99+|IPR029069+27-98+|IPR039298+22-99+
|
— |
PF03061+55-99+Thioesterase_superfamily
|
— |
PTHR21660+22-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-108
|
2h4u_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
11930.900
|
8.517
|
5.000
|
26.852
|
11.111
|
43.519
|
56.481
|
16.667
|
10.185
|
49.074
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
165.821
|
140.934
|
208.896
|
79.706
|
66.388
|
99.539
|
104.639
|
214.754
|
82.794
|
320.300
|
218.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.338
|
-0.960
|
-1.280
|
— |
0.599
|
— |
1.004
|
-0.895
|
— | — | — | — | — |
No JSON data available for plots.