Hg_chrom1_TN10mRNA_1831
Organism: Heterodera glycines Gene Locus: chr1:15696193-15698480 Feature type: polypeptideProtein Sequence
Length: 418
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.029 | 0.278 | 0.826 | 0.907 | 0.917 | 1.104 | 2.25 | 0.359 | 0.638 | 0.647 | 0.725 | 0.704 | 0.465 | 3.082 | 1.367 | 0.957 | 0.824 | 0.326 | 0.184 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1757
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
PPGRPGPPGRPGPPGNPGPPGKSGND
|
— | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.067
|
0.012
|
0.141
|
0.551
|
0.309
|
0.332
|
0.003
|
0.708
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006393
|
1.000
|
1.000
|
Hsc_gene_12889.t1
|
Hsc_gene_12889.t1
|
— |
P18834.2 Cuticle collagen 14 [Caenorhabditis elegans]
|
KAF7631098.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+19-71_22-71+|IPR008160+279-335_342-398+|IPR050632+27-416+
|
SM01088+19-71+
|
PF01391+279-335_342-398+Collagen_triple_helix_repeat_(20_copies)|PF01484+22-71+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+27-416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;104-418
|
1.000
|
7-103
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.946
|
41940.730
|
8.415
|
7.500
|
22.249
|
3.828
|
39.474
|
60.526
|
12.201
|
10.048
|
66.029
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
6262.672
|
1789.791
|
66.596
|
67.472
|
13804.338
|
44255.589
|
56.689
|
1738.539
|
100.436
|
4156.735
|
2418.322
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.979
|
-4.866
|
— |
7.645
|
1.696
|
-9.602
|
-4.781
|
-4.797
|
-5.508
|
— |
1.998
|
— | — |
No JSON data available for plots.