Hg_chrom1_TN10mRNA_1832
Organism: Heterodera glycines Gene Locus: chr1:15699837-15707423 Feature type: polypeptideProtein Sequence
Length: 788
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.092 | 0.554 | 0.088 | 1.121 | 1.399 | 0.589 | 0.761 | 1.41 | 1.526 | 1.096 | 2.239 | 1.234 | 1.269 | 1.295 | 1.124 | 0.687 | 0.884 | 0.976 | 0.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1758
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KHKR,KRRK,RRRR,QKSARRNGKKDKK,KKPIFQNSNSPMKRKSRL
|
— | — | — | — | — | — |
0.048
|
— | — |
0.329
|
0.220
|
0.098
|
0.040
|
0.173
|
0.063
|
0.171
|
0.151
|
0.269
|
0.958
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006394
|
1.000
|
1.000
|
Hsc_gene_12890.t1
|
Hsc_gene_12890.t1
|
— | — |
KAI1696571.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.959|GO:0005575_0.953|GO:0110165_0.953|GO:0032501_0.798|GO:0032502_0.774|GO:0048856_0.774|GO:0007275_0.742|GO:0009888_0.689|GO:0008544_0.670|GO:0018996_0.670|GO:0040002_0.670|GO:0042303_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0005576_0.553|GO:0005615_0.553
|
IPR006954+223-459_480-589+
|
— |
PF04870+223-459_480-589+Moulting_cycle
|
— |
PTHR21523+68-784+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
240-346
|
2.000
|
1-239;347-788
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
89317.060
|
10.450
|
36.000
|
24.873
|
8.883
|
47.081
|
52.919
|
15.102
|
9.772
|
43.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
606.612
|
85.187
|
59.948
|
37.697
|
2693.061
|
2196.424
|
206.720
|
196.686
|
15.505
|
588.904
|
343.162
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.739
|
-1.313
|
-0.558
|
6.126
|
— |
-3.400
|
-3.603
|
— |
-5.405
|
— | — | — | — |
No JSON data available for plots.