Hg_chrom1_TN10mRNA_1833
Organism: Heterodera glycines Gene Locus: chr1:15710119-15713776 Feature type: polypeptideProtein Sequence
Length: 528
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.639 | 0.573 | 0.93 | 0.261 | 1.547 | 1.214 | 0.473 | 0.568 | 0.8 | 0.768 | 1.263 | 1.003 | 0.579 | 1.166 | 2.667 | 1.867 | 1.118 | 0.717 | 0.0 | 0.557 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1759
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKSSSSDLSHSPKKAKKE,SVKRSTRSRSTSSSHSRRSRSRSRRRRSRSRSTRSPSRSRRRRSRSRDRKRSRSRRRSRSRDKDRKKASKRSRSRDRSTRESGSKASKRDKDRSSRERDKEKSSKKDKERERERERDRETTAKEKKERKRSRSREKKRDKDEEKSSKKSKKSSSSDLSHSPKKAKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.799
|
0.033
|
0.008
|
0.105
|
0.088
|
0.032
|
0.047
|
0.003
|
0.171
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006395
|
1.000
|
1.000
|
Hsc_gene_12891.t1
|
Hsc_gene_12891.t1;Hsc_gene_12891.t2
|
— |
O01159.3 Probable splicing factor, arginine/serine-rich 7 [Caenorhabditis elegans]
|
KAF7640403.1 Peptidase_M3 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.896|GO:0110165_0.895|GO:0005622_0.881|GO:0043226_0.876|GO:0043229_0.872|GO:0016020_0.869|GO:0005634_0.841|GO:0043227_0.841|GO:0043231_0.841|GO:0003674_0.813|GO:0005488_0.813|GO:0003676_0.725|GO:0097159_0.725|GO:0031974_0.718|GO:0031981_0.718|GO:0043233_0.718|GO:0070013_0.718|GO:0008150_0.674|GO:0006139_0.628|GO:0008152_0.628|GO:0043170_0.628|GO:0044238_0.628|GO:0090304_0.628|GO:0005654_0.619|GO:0009987_0.612|GO:0016070_0.612|GO:0003723_0.611|GO:0009058_0.578|GO:0009059_0.578|GO:0034654_0.578|GO:0044237_0.578|GO:0044249_0.578|GO:0141187_0.578|GO:0010467_0.573|GO:0032774_0.566
|
IPR000504+5-86_6-82_9-64_159-237_160-233_161-231+|IPR012677+2-81_156-260+|IPR035979+5-87_147-242+
|
SM00360+6-82_160-233+
|
PF00076+9-64_161-231+RNA_recognition_motif
|
— |
PTHR32343+5-112+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
219-528
|
1.000
|
1-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
60260.530
|
10.810
|
40.000
|
36.932
|
5.114
|
64.015
|
35.985
|
22.538
|
14.394
|
48.485
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
orange
|
2506.968
|
2231.492
|
2459.186
|
2469.268
|
2766.423
|
2645.435
|
2120.670
|
1711.640
|
3994.108
|
1820.862
|
2752.253
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.089
|
— |
0.115
|
0.132
|
— |
-0.308
|
-0.734
|
0.452
|
— | — | — | — | — |
No JSON data available for plots.