Hg_chrom1_TN10mRNA_1834
Organism: Heterodera glycines Gene Locus: chr1:15714603-15715298 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.444 | 0.608 | 0.951 | 0.451 | 0.98 | 0.838 | 0.934 | 0.98 | 0.871 | 0.883 | 0.99 | 1.538 | 1.452 | 0.251 | 1.2 | 0.747 | 1.714 | 1.386 | 0.0 | 0.769 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1760
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.579
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.133
|
0.873
|
0.164
|
0.224
|
0.011
|
0.065
|
0.009
|
0.178
|
0.146
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006396
|
1.000
|
1.000
|
Hsc_gene_12892.t1
|
Hsc_gene_12892.t1;Hsc_gene_12892.t2
|
— |
Q5R833.1 Acyl-coenzyme A thioesterase 13 [Pongo abelii]
|
KAI1715843.1 thioesterase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0047617
|
GO:0005575_0.811|GO:0110165_0.804|GO:0008150_0.799|GO:0005622_0.705|GO:0005737_0.705|GO:0016020_0.701|GO:0043226_0.643|GO:0043229_0.619|GO:0043227_0.599|GO:0043231_0.592|GO:0003674_0.576
|
IPR003736+34-130+|IPR006683+57-132+|IPR029069+22-140+|IPR039298+19-143+
|
— |
PF03061+57-132+Thioesterase_superfamily
|
G3DSA:3.10.129.10:FF:000021+7-146+Acyl-coenzyme_A_thioesterase_13
|
PTHR21660+19-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
148-153
|
1.000
|
1-147
|
2h4u_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.600
|
16599.920
|
8.484
|
3.500
|
25.490
|
9.804
|
47.059
|
52.941
|
14.379
|
11.111
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey60
|
334.851
|
205.339
|
172.384
|
200.159
|
256.898
|
295.281
|
334.366
|
269.383
|
690.360
|
297.022
|
465.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.480
|
— |
0.323
|
0.328
|
0.216
|
— | — |
0.455
|
— | — | — | — | — |
No JSON data available for plots.