SCN Proteipedia

Hg_chrom1_TN10mRNA_1839

Organism: Heterodera glycines Gene Locus: chr1:15739011-15743340 Feature type: polypeptide

Protein Sequence

Length: 683

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.851	0.817	0.985	0.757	0.927	1.239	0.767	1.391	1.074	1.108	0.799	1.034	1.017	0.704	1.345	1.548	1.296	0.865	1.014	0.646	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1765	—	—	1.222	2.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRKR,RRRLSEQISVDQRRYKE	—	—	—	—	—	—	0.000	—	—	0.309	0.266	0.026	0.708	0.102	0.252	0.268	0.230	0.415	0.086

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006400	1.000	1.000	Hsc_gene_12897.t1	Hsc_gene_12897.t1;Hsc_gene_12899.t1	—	Q8WYL5.2 Protein phosphatase Slingshot homolog 1 [Homo sapiens]	KAH7722619.1 Dual specificity phosphatasecatalytic domain containing protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0006470\|GO:0016311\|GO:0016791\|GO:0030837	GO:0008150_0.886\|GO:0003674_0.850\|GO:0005575_0.803\|GO:0009987_0.802\|GO:0110165_0.796\|GO:0003824_0.667\|GO:0005622_0.667\|GO:0008152_0.645\|GO:0016787_0.644\|GO:0140096_0.639\|GO:0044237_0.632\|GO:0065007_0.628\|GO:0016788_0.622\|GO:0004721_0.613\|GO:0016791_0.613\|GO:0042578_0.613\|GO:0050789_0.610\|GO:0044238_0.596\|GO:0043170_0.585\|GO:0050794_0.530\|GO:0006793_0.527\|GO:0006796_0.527\|GO:0050896_0.525\|GO:0016020_0.521\|GO:0019538_0.518\|GO:0005488_0.507	IPR000340+352-478+\|IPR000387+409-463+\|IPR014876+285-340_286-339+\|IPR016130+427-437+\|IPR020422+344-482_344-485+\|IPR029021+335-487_340-494+\|IPR043587+2-516+	SM00195+344-482+	PF00782+352-478+Dual_specificity_phosphatase,_catalytic_domain\|PF08766+286-339+DEK_C_terminal_domain	G3DSA:3.90.190.10:FF:000004+339-495+Protein_phosphatase_Slingshot_homolog_2	PTHR45864+2-516+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-38;489-540	2.000	39-488;541-683	2nt2_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.809	75655.200	8.227	15.500	25.622	9.956	52.709	47.291	14.641	10.981	53.001

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	midnightblue	833.573	1963.853	877.331	749.975	863.938	986.135	1019.917	851.455	591.919	460.718	516.947

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.392	-1.526	-0.117	0.173	0.205	—	—	0.401	—	—	—	—	—

No JSON data available for plots.

Back to Browser