SCN Proteipedia

Hg_chrom1_TN10mRNA_1840

Organism: Heterodera glycines Gene Locus: chr1:15743669-15751300 Feature type: polypeptide

Protein Sequence

Length: 919

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.759	1.189	0.93	0.6	1.106	1.479	0.725	1.143	1.33	1.441	0.89	1.344	1.269	0.732	0.91	1.057	0.838	0.923	0.837	0.992	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1766	—	—	1.222	1.000	2.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.944

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRKR,KKNLFDLAINIARRGKS,RRRLSEQISVDQRRYKE	—	—	—	—	—	—	0.000	—	—	0.423	0.163	0.010	0.477	0.138	0.310	0.197	0.038	0.192	0.105

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006401	1.000	1.000	Hsc_gene_12898.t1	Hsc_gene_12891.t1;Hsc_gene_12891.t2;Hsc_gene_12897.t1;Hsc_gene_12898.t1;Hsc_gene_12899.t1	—	O01159.3 Probable splicing factor, arginine/serine-rich 7 [Caenorhabditis elegans]	KAF7640403.1 Peptidase_M3 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0003779\|GO:0006470\|GO:0016311\|GO:0016791\|GO:0030837	GO:0008150_0.863\|GO:0003674_0.845\|GO:0005575_0.779\|GO:0110165_0.773\|GO:0009987_0.766\|GO:0003824_0.701\|GO:0005622_0.668\|GO:0016787_0.649\|GO:0008152_0.644\|GO:0140096_0.640\|GO:0016788_0.621\|GO:0044237_0.614\|GO:0004721_0.609\|GO:0016791_0.609\|GO:0042578_0.609\|GO:0065007_0.591\|GO:0044238_0.579\|GO:0050789_0.574\|GO:0043170_0.552\|GO:0016020_0.529\|GO:0050896_0.518\|GO:0006793_0.515\|GO:0006796_0.515\|GO:0019538_0.507	IPR000340+780-906+\|IPR000387+837-891+\|IPR000504+586-664_587-660_588-658+\|IPR012677+583-687+\|IPR014876+713-768_714-767+\|IPR016130+855-865+\|IPR020422+772-910_772-913+\|IPR029021+764-916_768-918+\|IPR035979+574-669+\|IPR043587+709-918+	SM00195+772-910+\|SM00360+587-660+	PF00076+588-658+RNA_recognition_motif\|PF00782+780-906+Dual_specificity_phosphatase,_catalytic_domain\|PF08766+714-767+DEK_C_terminal_domain	G3DSA:3.90.190.10:FF:000004+767-919+Protein_phosphatase_Slingshot_homolog_2	PTHR45864+709-918+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-919	2nt2_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.608	103566.140	6.321	-2.500	24.374	11.317	47.769	52.231	12.622	11.752	47.008

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	554.723	787.404	839.005	652.919	580.277	531.776	691.451	861.180	139.703	468.131	327.376

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.138	-0.407	-0.253	-0.202	—	0.389	0.591	—	—	—	—	—	—

No JSON data available for plots.

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