Hg_chrom1_TN10mRNA_1842
Organism: Heterodera glycines Gene Locus: chr1:15754802-15758515 Feature type: polypeptideProtein Sequence
Length: 470
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.089 | 0.693 | 0.774 | 0.807 | 1.206 | 0.709 | 0.557 | 1.596 | 0.662 | 1.696 | 0.645 | 1.126 | 1.655 | 0.777 | 1.389 | 1.246 | 0.802 | 0.935 | 0.818 | 1.126 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1768
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.717
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
66-101
|
0.993
|
30-83
|
0.998
|
— | — |
0.000
|
— | — |
0.129
|
0.917
|
0.141
|
0.189
|
0.092
|
0.028
|
0.088
|
0.162
|
0.046
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006403
|
1.000
|
1.000
|
Hsc_gene_12901.t1
|
Hsc_gene_12901.t1
|
— | — |
KAI1727383.1 tetratricopeptide repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0034551
|
GO:0005575_0.897|GO:0110165_0.890|GO:0016020_0.814|GO:0005622_0.813|GO:0005737_0.762|GO:0043226_0.747|GO:0043229_0.732|GO:0043227_0.712|GO:0043231_0.688|GO:0005739_0.554
|
IPR011990+133-266_134-417_287-449_301-407+|IPR040395+68-399+
|
— | — | — |
PTHR13143+68-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-470
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
53154.840
|
7.147
|
5.500
|
25.745
|
14.043
|
45.106
|
54.894
|
14.255
|
11.489
|
47.447
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
steelblue
|
1341.471
|
1572.212
|
2045.297
|
2133.145
|
2347.031
|
1723.304
|
1804.900
|
1662.305
|
762.458
|
314.019
|
506.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.151
|
0.303
|
0.169
|
0.106
|
-0.431
|
— | — |
0.261
|
— | — | — | — | — |
No JSON data available for plots.