Hg_chrom1_TN10mRNA_1843
Organism: Heterodera glycines Gene Locus: chr1:15758606-15759803 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.982 | 0.453 | 1.063 | 0.896 | 0.866 | 0.666 | 0.618 | 0.325 | 1.154 | 1.492 | 0.689 | 0.764 | 1.804 | 0.999 | 1.458 | 2.319 | 0.639 | 0.787 | 0.0 | 0.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1769
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.836
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
3-23
|
0.999
|
32-52
|
0.996
|
— | — |
0.000
|
— | — |
0.107
|
0.906
|
0.195
|
0.151
|
0.031
|
0.063
|
0.041
|
0.064
|
0.065
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006404
|
1.000
|
1.000
|
Hsc_gene_12902.t1
|
Hsc_gene_12902.t1
|
— |
Q9DCB8.2 Iron-sulfur cluster assembly 2 homolog, mitochondrial [Mus musculus]
|
KAI1727382.1 iron-sulfur cluster biosynthesis domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016226|GO:0051536
|
GO:0005575_0.810|GO:0110165_0.801|GO:0005622_0.687|GO:0003674_0.643|GO:0005737_0.640|GO:0005488_0.605|GO:0016020_0.601|GO:0008150_0.596|GO:0009987_0.527|GO:0043226_0.522|GO:0043229_0.510
|
IPR000361+46-144+|IPR016092+47-148+|IPR035903+42-133_44-150+
|
— |
PF01521+46-144+Iron-sulphur_cluster_biosynthesis
|
G3DSA:2.60.300.12:FF:000006+44-151+Iron-sulfur_cluster_assembly_2_mitochondrial
|
PTHR43011+9-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-154
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
16730.060
|
7.637
|
1.500
|
23.377
|
8.442
|
48.052
|
51.948
|
12.338
|
11.039
|
54.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
630.908
|
942.634
|
692.273
|
800.814
|
885.177
|
713.560
|
560.593
|
621.710
|
177.419
|
670.875
|
459.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.677
|
-0.372
|
0.320
|
— |
-0.296
|
-0.338
|
-0.304
|
— | — | — | — | — | — |
No JSON data available for plots.