Hg_chrom1_TN10mRNA_1845
Organism: Heterodera glycines Gene Locus: chr1:15768312-15769115 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.155 | 1.319 | 0.258 | 0.245 | 1.182 | 0.909 | 0.253 | 2.128 | 1.734 | 1.246 | 0.537 | 2.086 | 0.591 | 0.546 | 2.895 | 0.811 | 1.279 | 0.645 | 0.0 | 1.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1771
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRKR,RKPHRYRPGTVARREIRR
|
29-49
|
0.987
|
20-45
|
0.981
|
— | — |
0.000
|
— | — |
0.648
|
0.254
|
0.129
|
0.522
|
0.080
|
0.028
|
0.062
|
0.002
|
0.038
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001734
|
2.000
|
2.000
|
Hsc_gene_12860.t1;Hsc_gene_12882.t1
|
Hsc_gene_12860.t1;Hsc_gene_12882.t1;Hsc_gene_12903.t1
|
— |
P06352.2 Histone H3, embryonic [Strongylocentrotus purpuratus]
|
XP_012420631.1 PREDICTED: histone H3.3-like isoform X2 [Odobenus rosmarus divergens]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.854|GO:0110165_0.838|GO:0005622_0.782|GO:0043226_0.738|GO:0043229_0.732|GO:0016020_0.700|GO:0043227_0.613|GO:0043231_0.599|GO:0008150_0.568|GO:0009987_0.524|GO:0043228_0.517|GO:0043232_0.517
|
IPR000164+32-139_39-60_39-141_63-80_72-80_85-103_103-119_119-140+|IPR007125+36-137+|IPR009072+5-140_37-138+
|
SM00428+39-141+
|
PF00125+36-137+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000085+43-141+Histone_H3.2
|
PTHR11426+32-139+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;141-141
|
1.000
|
2-140
|
9j0p_e
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
16534.110
|
11.368
|
16.000
|
30.496
|
10.638
|
53.191
|
46.809
|
21.986
|
8.511
|
40.426
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
511.204
|
8.872
|
22.289
|
54.397
|
176.275
|
1838.672
|
100.440
|
2055.054
|
0.000
|
640.519
|
366.011
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.102
|
2.480
|
1.392
|
1.667
|
3.397
|
-4.185
|
— |
-4.208
|
-10.141
|
6.622
|
— | — |
5.144
|
No JSON data available for plots.