Hg_chrom1_TN10mRNA_1846
Organism: Heterodera glycines Gene Locus: chr1:15770698-15775585 Feature type: polypeptideProtein Sequence
Length: 796
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.789 | 0.964 | 0.982 | 0.866 | 0.9 | 0.934 | 0.673 | 1.57 | 0.838 | 1.07 | 0.324 | 0.887 | 2.443 | 1.232 | 1.308 | 1.508 | 0.989 | 0.933 | 1.256 | 0.591 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1772
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-32
|
0.939
|
1.000
|
1.000
|
0.000
|
0.195
|
0.059
|
0.022
|
0.250
|
0.273
|
0.716
|
0.594
|
0.078
|
0.644
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006405
|
1.000
|
1.000
|
Hsc_gene_12904.t1
|
Hsc_gene_12904.t1
|
— | — |
KAH7728037.1 Protein F38B2.3 [Aphelenchus avenae]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.848|GO:0005575_0.791|GO:0110165_0.774|GO:0009987_0.702|GO:0003674_0.678|GO:0016020_0.534|GO:0032501_0.512
|
IPR000859+53-175_64-173_65-172_584-699_601-696+|IPR035914+61-175_64-174_322-435_331-431_598-699_601-698+
|
SM00042+53-175_584-699+
|
PF00431+65-172_601-696+CUB_domain
|
— |
PTHR39385+51-719+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-796
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
89451.570
|
6.133
|
-5.500
|
22.487
|
15.578
|
46.859
|
53.141
|
11.683
|
10.804
|
53.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
769.602
|
98.332
|
963.352
|
457.962
|
757.852
|
1806.009
|
739.536
|
1536.274
|
98.639
|
908.286
|
561.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.064
|
2.082
|
-0.965
|
0.694
|
1.267
|
-1.277
|
-0.334
|
-0.913
|
-3.375
|
— | — | — | — |