Hg_chrom1_TN10mRNA_1848
Organism: Heterodera glycines Gene Locus: chr1:15782168-15784302 Feature type: polypeptideProtein Sequence
Length: 480
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.678 | 1.26 | 0.985 | 1.078 | 1.007 | 1.229 | 0.62 | 1.146 | 0.926 | 1.07 | 1.01 | 2.206 | 1.215 | 0.801 | 2.083 | 0.952 | 0.82 | 0.884 | 1.122 | 0.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1774
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKIENLQKCRKRKFL,KRRQQILERVRDKPRVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.732
|
0.238
|
0.057
|
0.311
|
0.092
|
0.028
|
0.035
|
0.051
|
0.043
|
0.298
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001084
|
3.000
|
2.000
|
Hsc_gene_1400.t1;Hsc_gene_3845.t1
|
Hsc_gene_10218.t1;Hsc_gene_10218.t2;Hsc_gene_15248.t1;Hsc_gene_15248.t3;Hsc_gene_15673.t1;Hsc_gene_16965.t1;Hsc_gene_20657.t1;Hsc_gene_2930.t1;Hsc_gene_3845.t1;Hsc_gene_6144.t1;Hsc_gene_8052.t2;Hsc_gene_8868.t1;Hsc_gene_8868.t2;Hsc_gene_9661.t1
|
— | — |
KAF7626085.1 hypothetical protein Mgra_00009723 [Meloidogyne graminicola]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+232-325+
|
— |
PF10551+232-325+MULE_transposase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-137
|
1.000
|
138-480
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
55450.660
|
10.152
|
31.500
|
30.625
|
9.792
|
52.500
|
47.500
|
19.167
|
11.458
|
46.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.