Hg_chrom1_TN10mRNA_185
Organism: Heterodera glycines Gene Locus: chr1:1321609-1327341 Feature type: polypeptideProtein Sequence
Length: 738
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.056 | 1.481 | 1.207 | 0.607 | 0.903 | 1.112 | 0.71 | 1.22 | 0.903 | 1.355 | 0.616 | 1.674 | 1.167 | 0.912 | 1.106 | 1.045 | 1.177 | 0.76 | 0.73 | 0.638 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_180
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.513
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.287
|
0.337
|
0.027
|
0.647
|
0.213
|
0.327
|
0.284
|
0.099
|
0.355
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000142
|
11.000
|
2.000
|
Hsc_gene_11567.t1;Hsc_gene_23079.t1
|
Hsc_gene_23079.t1
|
— |
Q20500.1 Intracellular phospholipase A2 [Caenorhabditis elegans]
|
KAI1725474.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006629|GO:0047499
|
GO:0008150_0.881|GO:0005575_0.746|GO:0110165_0.743|GO:0003674_0.730|GO:0009987_0.694|GO:0005622_0.624|GO:0050896_0.607|GO:0016020_0.594|GO:0065007_0.542|GO:0008152_0.536|GO:0044238_0.536|GO:0050789_0.520|GO:0050794_0.509|GO:0043226_0.502
|
IPR002110+31-60_38-129_64-93_64-96_99-128_99-131_132-162+|IPR002641+311-487_311-490+|IPR016035+309-617+|IPR036770+6-174_30-158+|IPR047148+12-629+
|
SM00248+31-60_64-93_99-128_132-162+
|
PF01734+311-487+Patatin-like_phospholipase|PF12796+38-129+Ankyrin_repeats_(3_copies)
|
— |
PTHR24139+12-629+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
178-260;637-738
|
2.000
|
1-177;261-636
|
4hll_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
81587.860
|
5.509
|
-10.000
|
23.984
|
9.756
|
49.187
|
50.813
|
11.924
|
12.060
|
54.065
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
424.325
|
196.327
|
160.254
|
180.647
|
441.509
|
358.098
|
448.975
|
238.340
|
65.711
|
1048.082
|
627.066
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.525
|
-0.257
|
0.283
|
1.258
|
— |
0.339
|
-0.698
|
1.060
|
-4.063
|
— | — | — | — |
No JSON data available for plots.