Hg_chrom1_TN10mRNA_1851
Organism: Heterodera glycines Gene Locus: chr1:15816223-15818019 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 1.398 | 0.874 | 0.414 | 0.641 | 0.986 | 0.486 | 1.923 | 1.442 | 1.332 | 1.384 | 1.414 | 1.469 | 1.063 | 1.472 | 1.133 | 0.749 | 0.473 | 1.479 | 0.636 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1777
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.780
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,KKASKNESRAQRKKK.,KRRNVRVAMKIKHRILRK,KGQKKASKNESRAQRKKK
|
42-62
|
0.989
|
11-52
|
0.997
|
— | — |
0.000
|
— | — |
0.739
|
0.123
|
0.016
|
0.327
|
0.075
|
0.064
|
0.066
|
0.006
|
0.204
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003097
|
1.000
|
2.000
|
Hsc_gene_25451.t1;Hsc_gene_5316.t1
|
— | — | — |
KAI3421912.1 hypothetical protein GPALN_012454 [Globodera pallida]
|
WP_314033961
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;402-416
|
1.000
|
25-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
48034.530
|
10.759
|
40.000
|
28.846
|
13.221
|
51.202
|
48.798
|
20.192
|
8.654
|
43.990
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
305.555
|
136.165
|
282.841
|
255.471
|
212.657
|
195.053
|
263.943
|
310.355
|
226.891
|
545.451
|
408.925
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
0.770
|
— |
-0.296
|
— |
0.446
|
0.563
|
— | — | — | — | — | — |
No JSON data available for plots.