SCN Proteipedia

Hg_chrom1_TN10mRNA_1852

Organism: Heterodera glycines Gene Locus: chr1:15818219-15835450 Feature type: polypeptide

Protein Sequence

Length: 3,318

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.409	0.813	0.795	0.572	0.814	1.878	0.962	1.673	0.609	1.092	0.352	1.737	0.77	1.333	1.255	1.356	1.018	0.731	0.719	0.39	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1778	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRP,RRRKRKP,RKRRRRRTPGGRRRDG,RRRDGTLTEERERQSERRR,RRDGTLTEERERQSERRRK,RRLALGAIAEASVAKKKAT	—	—	—	—	—	—	0.000	—	—	0.845	0.116	0.010	0.384	0.079	0.141	0.071	0.019	0.110	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003098	1.000	2.000	Hsc_gene_12911.t1;Hsc_gene_12911.t2	Hsc_gene_12911.t1;Hsc_gene_12911.t2	—	P0C657.2 Mediator of RNA polymerase II transcription subunit 13 [Caenorhabditis briggsae]	KAF7638617.1 Mediator of RNA polymerase II transcription subunit 13 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003712\|GO:0006357\|GO:0016592	GO:0008150_0.867\|GO:0009987_0.835\|GO:0005575_0.828\|GO:0110165_0.821\|GO:0005622_0.760\|GO:0016020_0.742\|GO:0043226_0.707\|GO:0043229_0.692\|GO:0043227_0.623\|GO:0005634_0.608\|GO:0043231_0.608\|GO:0008152_0.587\|GO:0044238_0.587\|GO:0065007_0.587\|GO:0043170_0.581\|GO:0003674_0.577\|GO:0050789_0.576\|GO:0009058_0.573\|GO:0009059_0.569\|GO:0044237_0.569\|GO:0044249_0.569\|GO:0010467_0.565\|GO:0050794_0.563\|GO:0006139_0.562\|GO:0034654_0.562\|GO:0016070_0.561\|GO:0032774_0.561\|GO:0090304_0.561\|GO:0141187_0.561\|GO:0005488_0.549\|GO:0005654_0.545\|GO:0031974_0.545\|GO:0031981_0.545\|GO:0043233_0.545\|GO:0070013_0.545\|GO:0006351_0.536	IPR009401+2813-3290+\|IPR041285+2310-2669+\|IPR051139+22-3294+	—	PF06333+2813-3290+Mediator_complex_subunit_13_C-terminal_domain\|PF18296+2310-2669+MID_domain_of_medPIWI	—	PTHR48249+22-3294+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-15;291-556;650-1618;1668-1861;2233-2279;2439-2592;2962-3253;3294-3318	7.000	16-290;557-649;1619-1667;1862-2232;2280-2438;2593-2961;3254-3293	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.818	354913.950	6.981	29.500	21.067	8.379	47.589	52.411	11.814	9.253	57.173

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	5678.403	25356.920	4963.189	3843.368	3015.931	3981.606	3138.194	2726.043	3419.633	4643.817	4119.167

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.582	-2.859	-0.261	-0.381	0.415	-0.335	-0.648	0.343	—	—	—	—	—

No JSON data available for plots.

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