Hg_chrom1_TN10mRNA_1857
Organism: Heterodera glycines Gene Locus: chr1:15870094-15870936 Feature type: polypeptideProtein Sequence
Length: 144
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.05 | 1.13 | 0.505 | 0.239 | 1.505 | 2.315 | 0.165 | 0.694 | 0.926 | 0.563 | 1.894 | 2.042 | 0.0 | 0.935 | 2.693 | 0.992 | 1.025 | 0.631 | 1.603 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1783
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RNSAKLKRMKRK,RKAEVVQVIRNSAKLKRMK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.865
|
0.154
|
0.004
|
0.556
|
0.131
|
0.026
|
0.040
|
0.015
|
0.061
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006410
|
1.000
|
1.000
|
Hsc_gene_12917.t1
|
Hsc_gene_12917.t1
|
— |
Q5XIB5.1 Coiled-coil domain-containing protein 86 [Rattus norvegicus]
|
KAI1715739.1 cgr1 family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.955|GO:0110165_0.948|GO:0005622_0.924|GO:0043226_0.905|GO:0043229_0.893|GO:0016020_0.880|GO:0043227_0.816|GO:0005634_0.798|GO:0043231_0.798|GO:0043228_0.594|GO:0043232_0.591|GO:0003674_0.537|GO:0005488_0.537
|
IPR005579+29-127+|IPR026570+12-135+
|
— |
PF03879+29-127+Cgr1_family
|
— |
PTHR13557+12-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-144
|
0.000
|
— |
8ir3_r
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.905
|
16939.400
|
11.637
|
21.000
|
38.889
|
3.472
|
65.972
|
34.028
|
27.083
|
11.806
|
40.972
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkmagenta
|
1802.154
|
1721.774
|
990.206
|
966.826
|
929.130
|
737.141
|
792.805
|
495.033
|
1470.992
|
4293.837
|
3084.046
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.029
|
-0.970
|
— | — |
-0.319
|
— |
-0.681
|
0.823
|
-1.652
|
— |
-2.012
|
— | — |
No JSON data available for plots.