Hg_chrom1_TN10mRNA_1859
Organism: Heterodera glycines Gene Locus: chr1:15875842-15879345 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.704 | 1.168 | 0.833 | 0.56 | 0.862 | 1.212 | 0.633 | 1.108 | 1.247 | 1.677 | 1.074 | 1.39 | 1.764 | 0.568 | 1.085 | 1.076 | 0.605 | 1.164 | 1.023 | 0.869 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1785
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
PAWKRLK,KREKRRIKKNR,KRLKSQLGRSIARRFERR,KRNEMGKVSLGTLRKPEKK
|
31-51
|
0.979
|
— | — | — | — |
0.000
|
— | — |
0.183
|
0.154
|
0.036
|
0.243
|
0.456
|
0.229
|
0.201
|
0.023
|
0.659
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006412
|
1.000
|
1.000
|
Hsc_gene_12919.t1
|
Hsc_gene_12919.t1
|
— | — |
KAF7640292.1 DC_STAMP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.965|GO:0009987_0.928|GO:0005575_0.747|GO:0110165_0.747|GO:0016020_0.719|GO:0071944_0.678|GO:0005886_0.677|GO:0071840_0.535|GO:0016043_0.530
|
IPR012858+449-642+|IPR051856+28-666+
|
— |
PF07782+449-642+DC-STAMP-like_protein
|
— |
PTHR21041+28-666+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
663-677
|
1.000
|
1-662
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
77257.770
|
9.545
|
25.500
|
24.372
|
12.851
|
45.347
|
54.653
|
14.623
|
9.749
|
44.461
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
304.404
|
120.982
|
261.459
|
232.136
|
453.196
|
423.879
|
698.787
|
226.006
|
3.438
|
423.022
|
243.200
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
0.803
|
— |
0.935
|
— |
0.732
|
-1.018
|
1.774
|
— |
6.281
|
— | — | — |
No JSON data available for plots.