Hg_chrom1_TN10mRNA_186
Organism: Heterodera glycines Gene Locus: chr1:1330735-1340264 Feature type: polypeptideProtein Sequence
Length: 1,434
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.589 | 0.951 | 1.154 | 1.278 | 1.27 | 0.764 | 1.185 | 1.643 | 0.971 | 1.3 | 1.6 | 1.433 | 0.872 | 0.783 | 0.797 | 0.72 | 0.655 | 1.126 | 0.718 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_181
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.636
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— |
KRLKVFFFYVRMYRK,RKLLGFLEMPFIRGKMR,KKNLPTDMLNEMIKKEIK,KKPSETLLCGGDMFCDKRR,RKICGLQPEEVESQRKKRQ
|
— | — | — | — |
1-22
|
— |
0.542
|
— |
0.000
|
0.260
|
0.100
|
0.036
|
0.240
|
0.153
|
0.091
|
0.118
|
0.010
|
0.344
|
0.597
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000233
|
6.000
|
4.000
|
Hsc_gene_22581.t1;Hsc_gene_22632.t1;Hsc_gene_24320.t1;Hsc_gene_24321.t1
|
Hsc_gene_11352.t1;Hsc_gene_22548.t1;Hsc_gene_22549.t1
|
— |
Q18206.2 Zinc metalloproteinase nas-36 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.782|GO:0005575_0.634|GO:0110165_0.634|GO:0032501_0.572|GO:0003674_0.510
|
IPR000742+1166-1177+|IPR001506+940-1146_969-1142_1039-1057_1058-1075_1089-1104_1128-1141+|IPR006026+945-1094+|IPR024079+895-1144+
|
SM00235+945-1094+
|
PF01400+969-1142+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+912-1260+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-161;1423-1434
|
1.000
|
162-1422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
163110.300
|
6.979
|
10.000
|
27.685
|
11.437
|
49.442
|
50.558
|
14.784
|
12.901
|
46.234
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
446.932
|
7.646
|
149.482
|
87.432
|
257.099
|
318.402
|
55.396
|
1383.676
|
1052.788
|
318.559
|
633.229
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.059
|
3.377
|
-0.664
|
1.526
|
— |
-2.513
|
2.019
|
-4.501
|
— |
-3.428
|
— | — | — |