Hg_chrom1_TN10mRNA_1860
Organism: Heterodera glycines Gene Locus: chr1:15879549-15883751 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.813 | 1.121 | 0.613 | 0.831 | 0.763 | 1.359 | 0.602 | 1.687 | 0.964 | 1.628 | 0.402 | 0.85 | 1.473 | 1.066 | 1.918 | 0.929 | 0.79 | 0.876 | 2.224 | 0.992 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1786
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
mitochondrion
|
mitochondria
|
— |
59-81
|
0.993
|
— | — | — |
0.597
|
0.052
|
1.000
|
— |
0.271
|
0.396
|
0.009
|
0.311
|
0.260
|
0.199
|
0.211
|
0.025
|
0.201
|
0.386
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006413
|
1.000
|
1.000
|
Hsc_gene_12921.t1
|
— | — | — |
KAH7728706.1 Protein LIN-17 b [Aphelenchus avenae]
|
KAH7440667
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
48120.350
|
9.868
|
24.000
|
23.373
|
14.940
|
44.819
|
55.181
|
15.422
|
7.952
|
45.301
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
116.501
|
160.202
|
318.732
|
245.083
|
68.272
|
86.711
|
77.711
|
109.613
|
44.444
|
76.489
|
62.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
0.476
|
-0.271
|
-1.878
|
— | — | — | — | — | — | — | — | — |