Hg_chrom1_TN10mRNA_1861
Organism: Heterodera glycines Gene Locus: chr1:15884716-15887570 Feature type: polypeptideProtein Sequence
Length: 260
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.85 | 0.447 | 1.469 | 0.398 | 0.962 | 1.183 | 0.824 | 1.923 | 1.282 | 1.299 | 1.399 | 1.357 | 0.855 | 1.109 | 1.334 | 0.659 | 0.946 | 0.758 | 0.592 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1787
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.150
|
0.673
|
0.142
|
0.356
|
0.191
|
0.553
|
0.285
|
0.047
|
0.597
|
0.287
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006414
|
1.000
|
1.000
|
Hsc_gene_12922.t2
|
Hsc_gene_12922.t1;Hsc_gene_12922.t2
|
— |
P34346.2 Adenylate kinase [Caenorhabditis elegans]
|
KAI3421915.1 Adenylate kinase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004017|GO:0005524|GO:0006139|GO:0016776|GO:0019205
|
GO:0008150_0.814|GO:0005575_0.753|GO:0110165_0.753|GO:0009987_0.741|GO:0005622_0.713|GO:0003674_0.629|GO:0005737_0.609|GO:0008152_0.603|GO:0044238_0.588|GO:0044237_0.580|GO:0016020_0.576|GO:0043226_0.556|GO:0043229_0.553|GO:0006139_0.539
|
IPR000850+33-246_35-248_36-239_38-51_66-80_115-131_195-210_212-226+|IPR006259+37-246+|IPR007862+161-195+|IPR027417+25-260_35-249+|IPR033690+115-126+
|
— |
PF00406+39-224+Adenylate_kinase|PF05191+161-195+Adenylate_kinase,_active_site_lid
|
G3DSA:3.40.50.300:FF:000106+35-249+Adenylate_kinase_mitochondrial
|
PTHR23359+33-246+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-57
|
1.000
|
58-260
|
2ak2_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
29255.560
|
9.303
|
10.000
|
33.462
|
9.615
|
50.385
|
49.615
|
19.615
|
13.846
|
46.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey60
|
3816.011
|
8563.865
|
3010.906
|
2463.952
|
3236.902
|
4110.670
|
3732.746
|
3969.290
|
3420.097
|
3221.851
|
3306.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.737
|
-1.934
|
-0.181
|
0.362
|
0.359
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.