Hg_chrom1_TN10mRNA_1863
Organism: Heterodera glycines Gene Locus: chr1:15894765-16292287 Feature type: polypeptideProtein Sequence
Length: 701
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.062 | 1.327 | 0.856 | 0.885 | 0.785 | 1.463 | 1.138 | 0.785 | 1.11 | 1.234 | 0.476 | 1.175 | 1.387 | 0.988 | 1.485 | 1.019 | 0.772 | 0.627 | 0.549 | 0.881 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1789
|
— |
Hg_chrom1_TN10gene_1789
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-19
|
0.978
|
1.000
|
0.000
|
0.000
|
0.160
|
0.131
|
0.035
|
0.286
|
0.087
|
0.133
|
0.103
|
0.066
|
0.435
|
0.845
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006416
|
1.000
|
1.000
|
Hsc_gene_18373.t1
|
Hsc_gene_18371.t1;Hsc_gene_18373.t1
|
— |
Q23490.1 Peroxidase mlt-7 [Caenorhabditis elegans]
|
KAI1709417.1 heme peroxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979|GO:0020037
|
GO:0008150_0.867|GO:0009987_0.805|GO:0005575_0.759|GO:0110165_0.759|GO:0003674_0.700|GO:0050896_0.602|GO:0003824_0.562|GO:0051716_0.542
|
IPR010255+154-701+|IPR019791+147-701_160-674_184-195_228-243_367-385_385-405_410-436_463-473_582-602_653-667+|IPR037120+142-701+|IPR050702+90-701+
|
— |
PF03098+160-674+Animal_haem_peroxidase
|
G3DSA:1.10.640.10:FF:000007+142-701+Peroxidase_mlt-7
|
PTHR11475+90-701+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-97
|
1.000
|
98-701
|
8ogi_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.882
|
76897.940
|
8.205
|
12.500
|
21.398
|
10.271
|
44.650
|
55.350
|
11.983
|
9.415
|
52.782
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
5523.629
|
1046.981
|
6207.924
|
2348.075
|
1023.523
|
1981.737
|
425.098
|
14943.411
|
6179.011
|
9040.340
|
7814.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.341
|
1.028
|
-1.296
|
-1.231
|
0.967
|
-2.211
|
2.812
|
-4.995
|
— | — |
-2.797
|
— | — |