Hg_chrom1_TN10mRNA_1866
Organism: Heterodera glycines Gene Locus: chr1:15949594-15953658 Feature type: polypeptideProtein Sequence
Length: 527
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.015 | 0.927 | 1.07 | 1.243 | 0.791 | 1.46 | 0.813 | 2.467 | 0.928 | 1.539 | 0.719 | 1.339 | 0.843 | 0.584 | 1.2 | 0.949 | 0.715 | 0.891 | 1.168 | 0.781 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1792
|
Hg_chrom1_TN10gene_1792
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.060
|
— | — |
0.340
|
0.347
|
0.056
|
0.684
|
0.268
|
0.085
|
0.152
|
0.055
|
0.083
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006418
|
1.000
|
1.000
|
Hsc_gene_12926.t1
|
Hsc_gene_12926.t1;Hsc_gene_12927.t1
|
— |
Q9H2P9.2 Diphthine methyl ester synthase [Homo sapiens]
|
KAI6228150.1 GPI mannosyltransferase 1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004164|GO:0008113|GO:0008168|GO:0017183
|
GO:0005575_0.781|GO:0110165_0.775|GO:0008150_0.763|GO:0003674_0.743|GO:0005622_0.659|GO:0003824_0.610|GO:0005737_0.584
|
IPR000878+3-181+|IPR002569+379-460+|IPR004551+3-208_3-280_3-296+|IPR014776+115-299+|IPR014777+1-114+|IPR035996+1-282+|IPR036509+371-522_372-459+
|
— |
PF00590+3-181+Tetrapyrrole_(Corrin/Porphyrin)_Methylases|PF01625+379-460+Peptide_methionine_sulfoxide_reductase
|
G3DSA:3.30.950.10:FF:000004+115-300+Diphthine_synthase_putative|G3DSA:3.40.1010.10:FF:000004+2-114+Putative_diphthine_synthase
|
PTHR10882+3-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-527
|
3i4t_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
58931.220
|
7.511
|
13.000
|
26.186
|
12.144
|
46.869
|
53.131
|
15.560
|
10.626
|
48.956
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.