Hg_chrom1_TN10mRNA_1868
Organism: Heterodera glycines Gene Locus: chr1:15956654-15957478 Feature type: polypeptideProtein Sequence
Length: 83
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.121 | 1.681 | 1.095 | 2.493 | 1.406 | 1.236 | 0.143 | 0.602 | 1.339 | 0.326 | 1.278 | 2.126 | 1.339 | 0.695 | 1.229 | 0.861 | 0.593 | 1.095 | 0.927 | 0.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1794
|
Hg_chrom1_TN10gene_1794
|
— |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKSKRKAPTKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.905
|
0.173
|
0.004
|
0.558
|
0.054
|
0.050
|
0.127
|
0.000
|
0.025
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006420
|
1.000
|
1.000
|
Hsc_gene_12929.t1
|
Hsc_gene_12929.t1
|
— |
Q9XVZ8.1 Transcription elongation factor 1 homolog [Caenorhabditis elegans]
|
NP_496983.1 Transcription elongation factor 1 homolog [Caenorhabditis elegans];Q9XVZ8.1 Transcription elongation factor 1 homolog [Caenorhabditis elegans];CAA22454.1 Transcription elongation factor 1 homolog [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.886|GO:0110165_0.881|GO:0005622_0.773|GO:0016020_0.709|GO:0043226_0.706|GO:0043229_0.692|GO:0043227_0.665|GO:0043231_0.658|GO:0008150_0.624|GO:0005634_0.598|GO:0009987_0.541
|
IPR007808+1-83_3-80+|IPR038567+24-83+
|
— |
PF05129+3-80+Transcription_elongation_factor_Elf1_like
|
G3DSA:2.20.25.190:FF:000002+24-83+Transcription_elongation_factor_1_homolog
|
PTHR20934+1-83+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-83
|
1wii_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
9502.870
|
6.860
|
0.500
|
30.120
|
8.434
|
51.807
|
48.193
|
15.663
|
14.458
|
51.807
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.