Hg_chrom1_TN10mRNA_1869
Organism: Heterodera glycines Gene Locus: chr1:15958030-15961030 Feature type: polypeptideProtein Sequence
Length: 403
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.212 | 1.385 | 1.038 | 0.77 | 0.951 | 1.209 | 0.532 | 1.365 | 1.048 | 1.308 | 0.526 | 1.022 | 1.172 | 0.907 | 1.063 | 1.063 | 1.058 | 1.203 | 0.573 | 0.511 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1795
|
Hg_chrom1_TN10gene_1795
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.536
|
0.517
|
0.026
|
0.641
|
0.122
|
0.177
|
0.092
|
0.046
|
0.095
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006421
|
1.000
|
1.000
|
Hsc_gene_12930.t1
|
Hsc_gene_12930.t1;Hsc_gene_16134.t1
|
— |
Q93169.1 Methylthioribose-1-phosphate isomerase [Caenorhabditis elegans]
|
KAF7634401.1 Methylthioribose-1-phosphate isomerase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0044237|GO:0044249
|
GO:0005575_0.818|GO:0110165_0.818|GO:0005622_0.702|GO:0005737_0.673|GO:0003674_0.658|GO:0008150_0.612|GO:0016020_0.599|GO:0043226_0.523|GO:0009987_0.517|GO:0043229_0.501
|
IPR000649+65-396+|IPR005251+33-394+|IPR011559+181-395+|IPR027363+14-204+|IPR037171+31-401+|IPR042529+210-402+
|
— |
PF01008+65-396+Initiation_factor_2_subunit_family
|
G3DSA:3.40.50.10470:FF:000006+211-402+Methylthioribose-1-phosphate_isomerase
|
PTHR43475+21-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-403
|
1w2w_N
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
44274.110
|
5.583
|
-5.500
|
22.829
|
9.429
|
47.395
|
52.605
|
11.414
|
11.414
|
55.335
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.