Hg_chrom1_TN10mRNA_1873
Organism: Heterodera glycines Gene Locus: chr1:15980591-15982460 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.24 | 1.535 | 1.292 | 1.4 | 1.1 | 1.041 | 0.967 | 1.523 | 0.902 | 1.784 | 1.0 | 1.493 | 0.846 | 0.293 | 0.622 | 0.798 | 0.583 | 1.0 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1799
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.577
|
0.489
|
0.025
|
0.649
|
0.212
|
0.182
|
0.145
|
0.043
|
0.132
|
0.345
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003101
|
2.000
|
1.000
|
Hsc_gene_15721.t1
|
— | — | — | — |
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.931|GO:0005575_0.876|GO:0110165_0.873|GO:0009987_0.866|GO:0003674_0.851|GO:0005622_0.799|GO:0008152_0.789|GO:0050896_0.789|GO:0005737_0.780|GO:0044238_0.768|GO:0003824_0.766|GO:0051716_0.762|GO:0032501_0.746|GO:0043170_0.741|GO:0032502_0.732|GO:0048856_0.731|GO:0071840_0.731|GO:0006950_0.727|GO:0016043_0.727|GO:0042221_0.721|GO:0007275_0.715|GO:0043226_0.715|GO:0006139_0.709|GO:0009056_0.706|GO:0043229_0.704|GO:0009628_0.700|GO:0090304_0.697|GO:0006996_0.696|GO:0016787_0.696|GO:0070887_0.696|GO:0033554_0.694|GO:0022414_0.688|GO:0009057_0.687|GO:1901698_0.685|GO:0019953_0.682|GO:0009314_0.680|GO:0007049_0.679|GO:0009416_0.679|GO:0071214_0.679|GO:0104004_0.679|GO:0000280_0.678|GO:0009790_0.678|GO:0022402_0.678|GO:0048285_0.678|GO:0006259_0.677|GO:0000278_0.676|GO:0006974_0.676|GO:0034655_0.676|GO:0140014_0.676|GO:1903047_0.676|GO:1901699_0.675|GO:0009411_0.674|GO:0009792_0.674|GO:0051276_0.674|GO:0051321_0.674|GO:0071478_0.674|GO:0140013_0.674|GO:0141188_0.674|GO:1903046_0.674|GO:0000070_0.670|GO:0000279_0.670|GO:0000712_0.670|GO:0000724_0.670|GO:0000725_0.670|GO:0000819_0.670|GO:0004518_0.670|GO:0004536_0.670|GO:0006281_0.670|GO:0006302_0.670|GO:0006308_0.670|GO:0006310_0.670|GO:0007059_0.670|GO:0007127_0.670|GO:0007131_0.670|GO:0007134_0.670|GO:0010165_0.670|GO:0010212_0.670|GO:0010225_0.670|GO:0016788_0.670|GO:0022403_0.670|GO:0035825_0.670|GO:0044848_0.670|GO:0051326_0.670|GO:0061982_0.670|GO:0071479_0.670|GO:0072710_0.670|GO:0072711_0.670|GO:0098762_0.670|GO:0098764_0.670|GO:0098813_0.670|GO:0140097_0.670|GO:0140527_0.670|GO:0140640_0.670|GO:0004519_0.654|GO:0004520_0.650|GO:0043228_0.582|GO:0043232_0.581|GO:0005856_0.559|GO:0015630_0.551|GO:0005694_0.547|GO:0000793_0.540|GO:0005819_0.540|GO:0030496_0.540|GO:0051233_0.540|GO:0072686_0.540|GO:1990023_0.540
|
IPR002110+4-34_9-98_38-67_38-70_71-100_103-168_104-133_104-136_137-166_137-169+|IPR036770+1-105_9-181_106-197+
|
SM00248+4-34_38-67_71-100_104-133_137-166+
|
PF12796+9-98_103-168+Ankyrin_repeats_(3_copies)
|
— |
PTHR44207+3-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-197
|
2rfm_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
21105.090
|
5.061
|
-5.000
|
26.396
|
6.091
|
46.193
|
53.807
|
12.690
|
13.706
|
53.807
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.