Hg_chrom1_TN10mRNA_1882
Organism: Heterodera glycines Gene Locus: chr1:16035205-16037745 Feature type: polypeptideProtein Sequence
Length: 430
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 1.244 | 0.592 | 0.561 | 1.589 | 1.312 | 0.692 | 0.581 | 1.654 | 1.414 | 1.656 | 1.368 | 1.357 | 0.403 | 1.044 | 0.997 | 0.762 | 0.951 | 0.179 | 0.274 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1808
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cytoplasm
|
nucleus
|
KKISKKGRKP
|
— | — | — | — |
1-26
|
0.974
|
1.000
|
1.000
|
1.000
|
0.397
|
0.238
|
0.079
|
0.519
|
0.507
|
0.304
|
0.418
|
0.039
|
0.291
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000513
|
1.000
|
6.000
|
Hsc_gene_12942.t1;Hsc_gene_18177.t1;Hsc_gene_2742.t1;Hsc_gene_2745.t1;Hsc_gene_2745.t2;Hsc_gene_2746.t1
|
— | — |
Q9FGJ6.1 RING-H2 finger protein ATL79 [Arabidopsis thaliana]
|
KYP58571.1 RING-H2 finger protein ATL1O [Cajanus cajan]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.866|GO:0005575_0.757|GO:0110165_0.754|GO:0003674_0.646|GO:0016020_0.625|GO:0009987_0.614|GO:0005622_0.567
|
IPR001841+368-415_369-414_369-415+|IPR013083+346-424+|IPR051834+341-418+
|
SM00184+369-414+
|
PF13639+368-415+Ring_finger_domain
|
— |
PTHR45931+341-418+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-91;429-430
|
1.000
|
92-428
|
8xft_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
48577.410
|
9.856
|
16.500
|
30.000
|
7.209
|
52.093
|
47.907
|
17.209
|
12.791
|
41.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |