Hg_chrom1_TN10mRNA_1886
Organism: Heterodera glycines Gene Locus: chr1:16069673-16077500 Feature type: polypeptideProtein Sequence
Length: 993
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.429 | 1.171 | 0.623 | 0.104 | 1.259 | 2.221 | 0.755 | 1.108 | 0.716 | 0.83 | 0.977 | 1.481 | 0.699 | 1.491 | 1.315 | 1.05 | 0.925 | 0.671 | 0.697 | 0.237 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1812
|
Hg_chrom1_TN10gene_1812
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKKK,KRVK,RKRR,RRDELERAEKERRMRD,RREQERQHQLVEAEMKRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.303
|
0.070
|
0.004
|
0.774
|
0.172
|
0.216
|
0.289
|
0.013
|
0.208
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003103
|
1.000
|
2.000
|
Hsc_gene_12947.t1;Hsc_gene_12947.t2
|
Hsc_gene_12947.t1;Hsc_gene_12947.t2
|
— | — |
KAI1727466.1 GYF domain-containing protein [Ditylenchus destructor]
|
No
|
-0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.864|GO:0008150_0.852|GO:0009987_0.823|GO:0065007_0.799|GO:0050789_0.791|GO:0050794_0.777|GO:0110165_0.775|GO:0005622_0.747|GO:0016020_0.601|GO:0005737_0.568|GO:0008152_0.568|GO:0043170_0.568|GO:0003674_0.560|GO:0005488_0.560|GO:0048519_0.549|GO:0044238_0.546|GO:0050896_0.546|GO:0048523_0.538|GO:0043226_0.533|GO:0051716_0.524
|
IPR003169+262-310_263-318_265-309_265-313+|IPR035445+249-328_255-313+|IPR051640+193-643+
|
SM00444+263-318+
|
PF02213+265-309+GYF_domain
|
— |
PTHR14445+193-643+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-275;321-821;869-993
|
2.000
|
276-320;822-868
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
108453.460
|
10.107
|
30.000
|
26.083
|
6.445
|
52.769
|
47.231
|
15.106
|
10.977
|
52.568
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.