Hg_chrom1_TN10mRNA_1888
Organism: Heterodera glycines Gene Locus: chr1:16084227-16087051 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.994 | 0.723 | 0.565 | 0.179 | 1.123 | 0.465 | 2.467 | 1.295 | 1.036 | 0.35 | 0.824 | 1.372 | 0.936 | 1.196 | 1.85 | 0.814 | 0.51 | 1.217 | 0.199 | 0.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1814
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRP,KKKVKKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.752
|
0.122
|
0.019
|
0.535
|
0.194
|
0.043
|
0.062
|
0.000
|
0.043
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006434
|
1.000
|
1.000
|
Hsc_gene_12949.t1
|
Hsc_gene_12949.t1
|
— |
Q22053.1 rRNA 2'-O-methyltransferase fibrillarin [Caenorhabditis elegans]
|
KAI3421895.1 fibrillarin [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0006364|GO:0008168
|
GO:0005575_0.860|GO:0110165_0.860|GO:0005622_0.785|GO:0043226_0.761|GO:0043229_0.755|GO:0016020_0.754|GO:0043227_0.693|GO:0043231_0.671|GO:0043228_0.649|GO:0043232_0.649|GO:0003674_0.609|GO:0008150_0.602|GO:0031974_0.593|GO:0043233_0.593|GO:0005634_0.590|GO:0070013_0.581|GO:0031981_0.572|GO:0005730_0.520
|
IPR000692+114-372_114-373_128-372+|IPR020813+243-257+|IPR029063+115-370_196-373+
|
SM01206+114-373+
|
PF01269+114-372+Fibrillarin
|
G3DSA:3.30.200.20:FF:000056+109-165+Fibrillarin_like_1|G3DSA:3.40.50.150:FF:000001+196-373+Fibrillarin_like_1
|
PTHR10335+77-378+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-188;383-386
|
1.000
|
189-382
|
7sed_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
39954.910
|
10.624
|
23.000
|
26.943
|
8.290
|
40.674
|
59.326
|
17.098
|
9.845
|
59.067
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.