Hg_chrom1_TN10mRNA_1893
Organism: Heterodera glycines Gene Locus: chr1:16103023-16106849 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.575 | 0.735 | 1.042 | 1.363 | 0.593 | 1.064 | 0.494 | 1.383 | 1.186 | 1.095 | 0.928 | 2.209 | 1.427 | 0.874 | 1.452 | 1.468 | 1.199 | 0.838 | 2.432 | 0.349 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1819
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KRSWRSTSNGRARRP
|
— | — |
52-96
|
0.998
|
— | — |
0.000
|
— | — |
0.528
|
0.228
|
0.007
|
0.560
|
0.129
|
0.189
|
0.297
|
0.083
|
0.065
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000514
|
6.000
|
1.000
|
Hsc_gene_12951.t1
|
Hsc_gene_4023.t1
|
— |
Q13616.2 Cullin-1 [Homo sapiens]
|
KAI3421893.1 Cullin-1 [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511|GO:0031625
|
GO:0008150_0.908|GO:0005575_0.831|GO:0009987_0.746|GO:0110165_0.718|GO:0005622_0.638|GO:0065007_0.607|GO:0050789_0.594|GO:0050896_0.571|GO:0008152_0.566|GO:0016020_0.562|GO:0050794_0.554|GO:0044238_0.549|GO:0043170_0.529|GO:0043226_0.529|GO:0043229_0.513
|
IPR001373+185-301+|IPR016158+187-322_190-301+|IPR016159+1-50+|IPR036317+183-301+|IPR045093+1-45+
|
SM00182+187-322+
|
PF00888+185-301+Cullin_family
|
— |
PTHR11932+1-45+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-506
|
1ldk_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
58000.940
|
9.298
|
27.000
|
25.296
|
12.253
|
50.198
|
49.802
|
16.008
|
9.289
|
49.605
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.