Hg_chrom1_TN10mRNA_1897
Organism: Heterodera glycines Gene Locus: chr1:16149559-16153530 Feature type: polypeptideProtein Sequence
Length: 504
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 1.107 | 1.082 | 1.026 | 1.19 | 1.221 | 0.402 | 1.29 | 1.367 | 1.555 | 0.992 | 1.984 | 1.653 | 0.916 | 1.255 | 0.765 | 0.781 | 0.691 | 1.374 | 0.584 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1823
|
Hg_chrom1_TN10gene_1823
|
— |
1.778
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.571
|
0.257
|
0.009
|
0.268
|
0.251
|
0.122
|
0.319
|
0.446
|
0.147
|
0.547
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000514
|
6.000
|
1.000
|
Hsc_gene_12951.t1
|
Hsc_gene_12951.t1;Hsc_gene_14081.t1;Hsc_gene_14081.t2;Hsc_gene_21748.t1;Hsc_gene_4023.t1
|
— |
Q13616.2 Cullin-1 [Homo sapiens]
|
KAI3421893.1 Cullin-1 [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511|GO:0031625
|
GO:0008150_0.914|GO:0005575_0.847|GO:0009987_0.749|GO:0110165_0.731|GO:0005622_0.644|GO:0016020_0.596|GO:0065007_0.590|GO:0050896_0.588|GO:0050789_0.574|GO:0043226_0.541|GO:0050794_0.540|GO:0008152_0.526|GO:0043229_0.518|GO:0044238_0.514|GO:0032991_0.513|GO:0043170_0.503
|
IPR001373+1-301+|IPR016158+157-301_187-318+|IPR016159+1-148+|IPR036317+155-301+|IPR045093+1-301+
|
SM00182+187-318+
|
PF00888+1-301+Cullin_family
|
G3DSA:1.20.1310.10:FF:000002+156-268+cullin-3_isoform_X1|G3DSA:1.20.1310.10:FF:000019+40-154+Cullin_1
|
PTHR11932+1-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-504
|
8ubu_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
58706.940
|
7.069
|
4.500
|
28.373
|
12.302
|
48.016
|
51.984
|
15.278
|
13.095
|
42.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.