Hg_chrom1_TN10mRNA_1898
Organism: Heterodera glycines Gene Locus: chr1:16160052-16162494 Feature type: polypeptideProtein Sequence
Length: 561
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 1.534 | 0.907 | 0.553 | 1.159 | 1.28 | 0.424 | 1.159 | 1.426 | 1.614 | 1.161 | 1.887 | 1.684 | 0.72 | 0.873 | 1.171 | 0.614 | 0.594 | 0.96 | 0.524 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1824
|
Hg_chrom1_TN10gene_1824
|
— |
1.000
|
— | — |
1.000
|
— |
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKFLQFIRQPMICKKRGT
|
— | — |
61-81
|
0.997
|
— | — |
0.000
|
— | — |
0.821
|
0.149
|
0.030
|
0.334
|
0.198
|
0.107
|
0.134
|
0.012
|
0.081
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000368
|
7.000
|
1.000
|
Hsc_gene_24056.t2
|
— | — |
Q80WQ9.1 Zinc finger BED domain-containing protein 4 [Mus musculus]
|
XP_056610546.1 zinc finger BED domain-containing protein 4-like [Triplophysa dalaica]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.914|GO:0110165_0.914|GO:0005622_0.881|GO:0016020_0.854|GO:0003674_0.833|GO:0043226_0.831|GO:0043229_0.810|GO:0005737_0.803|GO:0043227_0.776|GO:0005488_0.773|GO:0043231_0.759|GO:0005515_0.752|GO:0042802_0.672|GO:0005634_0.635|GO:0031974_0.575|GO:0043233_0.575|GO:0070013_0.573|GO:0031981_0.571|GO:0005654_0.560
|
IPR008906+506-553+|IPR012337+182-555+|IPR052035+266-560+
|
— |
PF05699+506-553+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+266-560+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-561
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
64203.920
|
7.468
|
6.500
|
26.203
|
11.408
|
49.733
|
50.267
|
14.260
|
11.943
|
43.137
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.