Hg_chrom1_TN10mRNA_19
Organism: Heterodera glycines Gene Locus: chr1:205841-210836 Feature type: polypeptideProtein Sequence
Length: 434
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.67 | 0.965 | 1.341 | 1.192 | 0.845 | 1.063 | 0.878 | 2.074 | 1.178 | 1.401 | 0.559 | 1.22 | 1.344 | 1.152 | 0.846 | 0.527 | 0.907 | 0.768 | 2.481 | 1.355 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_19
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.945
|
0.155
|
0.000
|
— |
0.119
|
0.211
|
0.032
|
0.311
|
0.625
|
0.431
|
0.498
|
0.034
|
0.188
|
0.733
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002854
|
2.000
|
1.000
|
Hsc_gene_14946.t1
|
Hsc_gene_14946.t1
|
— |
Q8MYN5.1 Aspartic protease 17 [Caenorhabditis elegans]
|
CDJ94867.1 Peptidase A1 domain containing protein [Haemonchus contortus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.767|GO:0110165_0.767|GO:0008150_0.746|GO:0003674_0.640|GO:0003824_0.591|GO:0016020_0.589|GO:0005622_0.566|GO:0005737_0.566|GO:0071944_0.516
|
IPR001461+28-402_72-92_238-251_286-297_376-391+|IPR021109+7-403_60-400_65-247+|IPR033121+66-400_66-401+|IPR034164+66-400+
|
— |
PF00026+66-401+Eukaryotic_aspartyl_protease
|
— |
PTHR47966+28-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-434
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
49744.540
|
5.235
|
-11.000
|
24.424
|
16.820
|
41.935
|
58.065
|
11.982
|
12.442
|
48.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
374.409
|
46.599
|
251.080
|
262.911
|
83.597
|
64.400
|
45.040
|
94.082
|
70.056
|
1267.605
|
754.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.203
|
2.360
|
— |
-1.687
|
-0.361
|
-0.505
|
— |
-0.923
|
-4.317
|
— |
-3.625
|
— | — |