SCN Proteipedia

Hg_chrom1_TN10mRNA_190

Organism: Heterodera glycines Gene Locus: chr1:1350704-1378330 Feature type: polypeptide

Protein Sequence

Length: 2,380

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.353	1.28	0.672	0.435	0.756	2.338	0.81	2.269	0.56	1.113	0.433	1.236	0.724	1.236	1.149	1.363	0.833	0.929	0.356	0.383	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_185	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.969

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRRR,PKPS,RFSKRRQ	—	—	—	—	—	—	0.000	—	—	0.222	0.102	0.021	0.648	0.149	0.206	0.201	0.010	0.438	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001639	3.000	1.000	Hsc_gene_7633.t1	Hsc_gene_26736.t1	—	Q9QZQ1.3 Afadin [Mus musculus]	KAI1706325.1 ras association (RalGDS/AF-6) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005911\|GO:0007165	GO:0005575_0.901\|GO:0110165_0.886\|GO:0008150_0.872\|GO:0009987_0.826\|GO:0005622_0.760\|GO:0016020_0.740\|GO:0065007_0.711\|GO:0050789_0.687\|GO:0071944_0.669\|GO:0003674_0.667\|GO:0050794_0.652\|GO:0032502_0.649\|GO:0048856_0.649\|GO:0005488_0.629\|GO:0005886_0.624\|GO:0043226_0.605\|GO:0005737_0.593\|GO:0016043_0.583\|GO:0071840_0.583\|GO:0005515_0.580\|GO:0032501_0.567\|GO:0030154_0.521\|GO:0048869_0.521\|GO:0030054_0.520\|GO:0050896_0.506\|GO:0007275_0.504	IPR000159+58-160_70-149_70-158_295-409_297-405+\|IPR001478+1413-1503_1422-1499_1426-1503_1440-1500+\|IPR002710+827-1077_947-1051_947-1059+\|IPR008984+546-582+\|IPR028842+620-1196+\|IPR029071+69-148_296-408+\|IPR036034+1413-1541_1419-1502+	SM00228+1426-1503+\|SM00314+58-160_295-409+\|SM01132+947-1059+	PF00595+1422-1499+PDZ_domain\|PF00788+70-149_297-405+Ras_association_(RalGDS/AF-6)_domain\|PF01843+947-1051+DIL_domain	—	PTHR10398+620-1196+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2;193-248;400-456;1068-1417;1501-2380	4.000	3-192;249-399;457-1067;1418-1500	7mfw_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.869	256416.720	8.047	60.000	21.261	8.908	50.504	49.496	13.025	8.235	56.092

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	4349.794	7824.837	4644.438	2819.722	4057.392	5719.411	3432.085	3103.025	2414.713	5368.972	4102.861

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.981	-1.609	-0.612	0.493	0.511	-0.727	-0.987	0.287	—	—	—	—	—

No JSON data available for plots.

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