SCN Proteipedia

Hg_chrom1_TN10mRNA_1904

Organism: Heterodera glycines Gene Locus: chr1:16212290-16215609 Feature type: polypeptide

Protein Sequence

Length: 412

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.931	1.129	0.971	0.753	1.092	1.245	0.982	1.82	0.701	0.886	0.883	1.571	1.214	2.147	1.436	1.248	0.438	0.331	0.56	0.357	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1829	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PKRPR,RRRKRFKRKPT	—	—	10-35	0.998	—	—	0.000	—	—	0.941	0.185	0.006	0.211	0.031	0.023	0.028	0.013	0.031	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006440	1.000	1.000	Hsc_gene_12972.t1	Hsc_gene_12972.t1	—	Q18694.1 Forkhead box protein unc-130 [Caenorhabditis elegans]	EJW82734.1 Foxb2 protein [Wuchereria bancrofti]	No	-0.420

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0043565	GO:0008150_0.939\|GO:0065007_0.815\|GO:0009987_0.807\|GO:0050789_0.781\|GO:0050794_0.777\|GO:0003674_0.688\|GO:0005488_0.682\|GO:0005575_0.668\|GO:0110165_0.668\|GO:0032502_0.664\|GO:0048856_0.664\|GO:0008152_0.643\|GO:0019222_0.643\|GO:0031323_0.643\|GO:0044237_0.643\|GO:0032501_0.642\|GO:0009058_0.635\|GO:0009059_0.635\|GO:0010467_0.635\|GO:0043170_0.635\|GO:0044249_0.635\|GO:0044238_0.633\|GO:0080090_0.633\|GO:0060255_0.628\|GO:0003676_0.620\|GO:0097159_0.620\|GO:0009889_0.617\|GO:0031326_0.617\|GO:0007275_0.616\|GO:0010468_0.615\|GO:0010556_0.615\|GO:0005622_0.613\|GO:0006139_0.613\|GO:0016070_0.613\|GO:0032774_0.613\|GO:0034654_0.613\|GO:0090304_0.613\|GO:0141187_0.613\|GO:0019219_0.595\|GO:0043226_0.593\|GO:0051252_0.591\|GO:0006351_0.585\|GO:2001141_0.583\|GO:0006355_0.579\|GO:0043229_0.578\|GO:0003677_0.559\|GO:0016020_0.544\|GO:0048731_0.515	IPR001766+158-248_159-244_160-173_160-254_181-198_204-221+\|IPR018122+160-173+\|IPR030456+204-210+\|IPR036388+147-255+\|IPR036390+158-254+\|IPR050211+44-328+	SM00339+158-248+	PF00250+159-244+Forkhead_domain	G3DSA:1.10.10.10:FF:000071+147-255+Forkhead_box_F1	PTHR11829+44-328+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-173;294-341	2.000	174-293;342-412	2hdc_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.958	45356.850	8.256	11.500	28.398	9.951	49.515	50.485	16.505	11.893	53.398

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	—	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser