SCN Proteipedia

Hg_chrom1_TN10mRNA_1905

Organism: Heterodera glycines Gene Locus: chr1:16226961-16250503 Feature type: polypeptide

Protein Sequence

Length: 1,747

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.952	0.852	0.801	0.395	0.773	1.688	0.9	1.402	0.611	0.967	0.486	1.482	0.636	1.123	2.301	1.562	1.051	0.85	0.793	0.589	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1830	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	—	—

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	FKRR,RHRR,RKKR,RRNSNSDQSLLRRRQRP,RRTTQRSQQRRTRRRFP,RSRSGSAARRRRGSSRH,RRRMSRRRKRREQRRAER,KRPMEEVIERRKWLWSRRK,RRRPTLSNFLAECERYRRR,RRPTLSNFLAECERYRRRH,KRDARGRRLGGEWDKRLER,KRRSNITTSARRRMSRRRK,RRSNITTSARRRMSRRRKR	—	—	—	—	—	—	0.000	—	—	0.282	0.140	0.021	0.666	0.175	0.154	0.236	0.126	0.616	0.077

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000764	1.000	5.000	Hsc_gene_12976.t1;Hsc_gene_12976.t2;Hsc_gene_12976.t3;Hsc_gene_12976.t5;Hsc_gene_12976.t8	Hsc_gene_12976.t1;Hsc_gene_12976.t2;Hsc_gene_12976.t3;Hsc_gene_12976.t4;Hsc_gene_12976.t5;Hsc_gene_12976.t6;Hsc_gene_12976.t7;Hsc_gene_12976.t8	—	Q64605.2 Receptor-type tyrosine-protein phosphatase S [Rattus norvegicus]	KAI6196840.1 Tyrosine-protein phosphatase [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0006470\|GO:0016311	GO:0005575_0.864\|GO:0110165_0.864\|GO:0008150_0.860\|GO:0003674_0.802\|GO:0016020_0.769\|GO:0009987_0.761\|GO:0065007_0.684\|GO:0071944_0.636\|GO:0050789_0.633\|GO:0050794_0.631\|GO:0005886_0.616\|GO:0032501_0.599\|GO:0005488_0.567\|GO:0003824_0.555\|GO:0140096_0.553\|GO:0016787_0.543\|GO:0016788_0.522\|GO:0004721_0.516\|GO:0016791_0.516\|GO:0032502_0.516\|GO:0042578_0.516\|GO:0048856_0.516	IPR000242+596-876_597-874_623-872_650-657_667-687_770-787_810-828_857-867_907-1070_913-1615_934-1060_1482-1611_1484-1613+\|IPR000387+789-865_1528-1604+\|IPR003595+771-873_1505-1612+\|IPR016130+813-823+\|IPR029021+572-880_586-878_884-1073_921-1057_1461-1622_1501-1615+\|IPR050348+1471-1629+	SM00194+596-876_913-1615+\|SM00404+771-873_1505-1612+	PF00102+623-872_934-1060_1482-1611+Protein-tyrosine_phosphatase	G3DSA:3.90.190.10:FF:000062+576-882+Receptor-type_tyrosine-protein_phosphatase_kappa	PTHR19134+1471-1629+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-570;1068-1478;1622-1747	2.000	571-1067;1479-1621	3qcm_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.875	193676.080	11.050	119.500	26.331	8.128	53.921	46.079	17.287	9.044	53.749

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	—	—	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	—	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser