Hg_chrom1_TN10mRNA_1911
Organism: Heterodera glycines Gene Locus: chr1:16285681-16287380 Feature type: polypeptideProtein Sequence
Length: 238
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.368 | 0.586 | 1.07 | 0.58 | 1.611 | 1.077 | 0.65 | 2.311 | 0.56 | 1.022 | 0.637 | 2.224 | 1.984 | 1.535 | 1.2 | 0.42 | 0.964 | 0.573 | 0.323 | 0.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1836
|
Hg_chrom1_TN10gene_1836
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.628
|
0.106
|
0.035
|
0.547
|
0.025
|
0.044
|
0.072
|
0.002
|
0.084
|
0.419
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001737
|
2.000
|
2.000
|
Hsc_gene_18374.t1;Hsc_gene_18374.t2
|
— | — |
A8X181.1 Protein adenylyltransferase fic-1 [Caenorhabditis briggsae]
|
KAI3422304.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.938|GO:0003674_0.883|GO:0005575_0.862|GO:0110165_0.862|GO:0050896_0.789|GO:0003824_0.776|GO:0016020_0.757|GO:0006950_0.725|GO:0005886_0.715|GO:0071944_0.715|GO:0016740_0.698|GO:0016772_0.662|GO:0016779_0.655|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.649|GO:0005622_0.608|GO:0008152_0.588|GO:0005488_0.585|GO:0005737_0.579|GO:0005515_0.553|GO:0044238_0.553|GO:0043226_0.549|GO:0051716_0.533|GO:0043229_0.523|GO:0043227_0.519|GO:0043170_0.516|GO:0019538_0.505
|
IPR003812+87-183_87-224+|IPR036597+39-233_84-223+|IPR040198+85-225+
|
— |
PF02661+87-183+Fic/DOC_family
|
— |
PTHR13504+85-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-71
|
1.000
|
72-238
|
6zmd_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
26849.280
|
5.177
|
-7.500
|
30.252
|
14.286
|
45.798
|
54.202
|
14.706
|
15.546
|
47.899
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.