Hg_chrom1_TN10mRNA_1915
Organism: Heterodera glycines Gene Locus: chr1:16302341-16303399 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.309 | 1.932 | 1.027 | 1.375 | 0.997 | 0.767 | 1.305 | 0.831 | 2.362 | 0.898 | 0.705 | 2.345 | 0.646 | 0.383 | 1.017 | 1.756 | 0.708 | 0.705 | 0.0 | 0.391 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1840
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
Gland7|KJ825718.1#TN10pacbiomikado.Chromosome_2G658.1
|
— | — | — | — |
21-pJ2_J3
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.666
|
0.557
|
0.070
|
0.529
|
0.312
|
0.142
|
0.095
|
0.456
|
0.418
|
0.379
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000369
|
1.000
|
7.000
|
Hsc_gene_12975.t1;Hsc_gene_18358.t1;Hsc_gene_18359.t1;Hsc_gene_18360.t1;Hsc_gene_18360.t2;Hsc_gene_18361.t1;Hsc_gene_9091.t1
|
— | — | — |
AJR19775.1 esophageal gland-localized secretory protein 7 [Heterodera glycines]
|
WP_099864306
|
0.650
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-301
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
32464.690
|
5.403
|
-3.500
|
22.924
|
5.316
|
50.831
|
49.169
|
11.296
|
11.628
|
54.817
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
3509.778
|
13.880
|
304.046
|
4527.150
|
3957.617
|
341.439
|
469.138
|
99.670
|
3807.743
|
8857.120
|
6693.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.227
|
8.216
|
4.005
|
-0.225
|
-3.521
|
0.466
|
-1.889
|
2.377
|
— | — | — | — | — |
No JSON data available for plots.