Hg_chrom1_TN10mRNA_1917
Organism: Heterodera glycines Gene Locus: chr1:16313092-16318950 Feature type: polypeptideProtein Sequence
Length: 662
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.528 | 1.054 | 0.989 | 0.417 | 0.73 | 0.852 | 1.061 | 1.057 | 1.007 | 1.531 | 0.641 | 1.244 | 0.881 | 0.842 | 0.74 | 0.928 | 1.412 | 0.938 | 0.465 | 0.489 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1842
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.586
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
53-89
|
0.983
|
— | — |
0.000
|
— | — |
0.441
|
0.141
|
0.023
|
0.543
|
0.321
|
0.244
|
0.343
|
0.010
|
0.176
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003105
|
1.000
|
2.000
|
Hsc_gene_18367.t1;Hsc_gene_18367.t2
|
Hsc_gene_18367.t1;Hsc_gene_18367.t2;Hsc_gene_18375.t1;Hsc_gene_18375.t2
|
— |
Q5R9I6.1 26S proteasome non-ATPase regulatory subunit 2 [Pongo abelii]
|
KAF7637169.1 26S proteasome non-ATPase regulatory subunit 2 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.901|GO:0110165_0.895|GO:0005622_0.768|GO:0016020_0.689|GO:0008150_0.684|GO:0005737_0.545|GO:0043226_0.521|GO:0032991_0.520|GO:0043229_0.512
|
IPR002015+461-491+|IPR011989+3-542+|IPR016024+81-510+|IPR041433+597-646+
|
— |
PF01851+461-491+Proteasome/cyclosome_repeat|PF18051+597-646+26S_proteasome_non-ATPase_regulatory_subunit_RPN1_C-terminal
|
— |
PTHR10943+9-647+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
277-382;658-662
|
2.000
|
1-276;383-657
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
69517.030
|
5.750
|
-6.000
|
19.789
|
7.553
|
42.749
|
57.251
|
9.970
|
9.819
|
58.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
2953.199
|
2160.860
|
2225.824
|
4179.342
|
4458.247
|
3623.572
|
3104.726
|
2236.788
|
1167.110
|
3798.905
|
2670.993
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.186
|
0.815
|
1.017
|
— |
-0.284
|
-0.212
|
-0.800
|
0.616
|
-1.828
|
2.017
|
— | — | — |
No JSON data available for plots.