Hg_chrom1_TN10mRNA_1923
Organism: Heterodera glycines Gene Locus: chr1:16342893-16346853 Feature type: polypeptideProtein Sequence
Length: 529
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.637 | 0.879 | 0.722 | 0.521 | 1.985 | 0.824 | 0.743 | 1.229 | 1.26 | 1.201 | 2.119 | 1.668 | 1.365 | 0.836 | 0.463 | 0.675 | 0.62 | 0.974 | 1.309 | 0.556 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1848
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom1_TN10mRNA_1923
|
7-Not_Clustered
|
0.718
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
nucleus
|
RKLKGKMANCRQFQKKGTK,KEEGCKKKEKKVKGVKEEKEMKEGSKKKEKK
|
— | — | — | — |
1-23
|
0.972
|
1.000
|
0.000
|
0.000
|
0.505
|
0.206
|
0.020
|
0.325
|
0.145
|
0.158
|
0.153
|
0.001
|
0.176
|
0.695
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006445
|
1.000
|
1.000
|
Hsc_gene_18353.t1
|
— | — | — |
KAI3413229.1 hypothetical protein GPALN_010728 [Globodera pallida]
|
XP_022947863
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
— |
IPR000719+58-475+|IPR011009+103-469+
|
— | — | — |
PTHR44167+38-519+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
471-529
|
1.000
|
1-470
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
60559.210
|
7.907
|
8.500
|
34.594
|
10.964
|
50.095
|
49.905
|
18.715
|
15.879
|
40.265
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2960.755
|
68.339
|
1270.148
|
395.748
|
82.621
|
11.085
|
16.845
|
352.595
|
13025.058
|
2360.491
|
6931.020
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.989
|
2.396
|
-1.576
|
-2.291
|
-2.884
|
— |
4.892
|
-4.245
|
2.346
|
-4.851
|
-4.647
|
2.827
|
— |