Hg_chrom1_TN10mRNA_1928
Organism: Heterodera glycines Gene Locus: chr1:16384221-16385259 Feature type: polypeptideProtein Sequence
Length: 246
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 1.04 | 1.035 | 1.402 | 0.813 | 0.313 | 0.919 | 2.236 | 1.265 | 1.318 | 0.185 | 2.63 | 2.371 | 0.704 | 1.078 | 0.871 | 0.533 | 1.232 | 0.625 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1853
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — |
17-40
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.252
|
0.076
|
0.032
|
0.302
|
0.318
|
0.590
|
0.403
|
0.021
|
0.437
|
0.461
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006447
|
1.000
|
1.000
|
Hsc_gene_3970.t1
|
— | — | — |
ADW77537.1 ran-binding protein [Heterodera glycines]
|
XP_051459982
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.769|GO:0005575_0.634|GO:0110165_0.634|GO:0005622_0.522|GO:0005737_0.522|GO:0009987_0.511
|
IPR001870+44-237+|IPR003877+114-236_117-234+|IPR013320+98-242+|IPR043136+25-244+|IPR044736+100-233+|IPR050618+74-243+
|
SM00449+114-236+
|
PF00622+117-234+SPRY_domain
|
— |
PTHR12864+74-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-246
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.600
|
27343.620
|
5.696
|
-4.500
|
21.545
|
15.854
|
36.585
|
63.415
|
10.976
|
10.569
|
51.626
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
293.578
|
39.518
|
91.989
|
59.010
|
26.331
|
30.367
|
20.982
|
102.190
|
329.401
|
898.460
|
654.577
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.991
|
0.442
|
-0.532
|
-1.196
|
— | — |
1.651
|
-2.142
|
— | — |
-4.928
|
— | — |
No JSON data available for plots.