Hg_chrom1_TN10mRNA_1930
Organism: Heterodera glycines Gene Locus: chr1:16450626-16452828 Feature type: polypeptideProtein Sequence
Length: 279
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.625 | 1.584 | 0.912 | 0.742 | 1.434 | 1.195 | 0.427 | 1.254 | 1.673 | 0.969 | 1.358 | 0.422 | 1.394 | 0.896 | 1.024 | 1.28 | 0.823 | 0.706 | 0.827 | 0.738 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1855
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSR,KRKNSVDEIKKKREN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.890
|
0.126
|
0.004
|
0.233
|
0.050
|
0.046
|
0.024
|
0.012
|
0.062
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006448
|
1.000
|
1.000
|
Hsc_gene_26472.t1
|
— | — | — |
KAI1723443.1 BED zinc finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0005575_0.907|GO:0110165_0.902|GO:0005622_0.873|GO:0043226_0.837|GO:0016020_0.830|GO:0043229_0.824|GO:0003674_0.814|GO:0043227_0.797|GO:0005488_0.796|GO:0005737_0.777|GO:0043231_0.777|GO:0005515_0.746|GO:0005634_0.696|GO:0042802_0.667|GO:0031974_0.585|GO:0043233_0.585|GO:0070013_0.584|GO:0031981_0.583|GO:0005654_0.564
|
IPR003656+3-58_7-49+|IPR036236+8-55+|IPR052717+19-207+
|
SM00614+8-51+
|
PF02892+7-49+BED_zinc_finger
|
— |
PTHR46169+19-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
69-116
|
2.000
|
1-68;117-279
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
31975.130
|
7.682
|
4.500
|
30.108
|
11.111
|
55.556
|
44.444
|
16.487
|
13.620
|
46.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
24.265
|
19.799
|
19.452
|
17.378
|
14.928
|
11.022
|
8.695
|
15.321
|
72.677
|
11.677
|
37.820
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.