Hg_chrom1_TN10mRNA_1932
Organism: Heterodera glycines Gene Locus: chr1:16468238-16470613 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.587 | 0.88 | 1.032 | 0.761 | 1.052 | 1.86 | 0.939 | 0.631 | 1.052 | 0.853 | 0.765 | 1.113 | 0.613 | 1.577 | 0.773 | 1.307 | 1.293 | 0.813 | 0.485 | 1.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1857
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KSRPIGSRKNSAKKR,RKNSAKKRITDQKDKKT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.437
|
0.102
|
0.049
|
0.477
|
0.380
|
0.125
|
0.191
|
0.073
|
0.191
|
0.196
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000370
|
5.000
|
3.000
|
Hsc_gene_9417.t1;Hsc_gene_9423.t1;Hsc_gene_9423.t2
|
— | — | — |
KAI3418009.1 hypothetical protein GPALN_010603 [Globodera pallida]
|
WP_013743811
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-150;264-317
|
1.000
|
151-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
34934.870
|
4.740
|
-8.000
|
22.082
|
9.464
|
50.158
|
49.842
|
10.095
|
11.987
|
55.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
199.115
|
20.463
|
174.062
|
122.484
|
47.327
|
15.007
|
22.586
|
41.561
|
909.144
|
22.960
|
402.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.862
|
2.446
|
-0.399
|
-1.402
|
-1.643
|
— |
1.359
|
-0.738
|
5.062
|
-2.726
|
— | — | — |
No JSON data available for plots.