Hg_chrom1_TN10mRNA_1933
Organism: Heterodera glycines Gene Locus: chr1:16473860-16488577 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.497 | 1.61 | 0.926 | 1.194 | 0.679 | 1.358 | 1.043 | 0.916 | 1.177 | 0.963 | 1.358 | 1.797 | 1.414 | 0.822 | 0.873 | 0.931 | 1.135 | 0.926 | 0.157 | 0.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1858
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_18326;Hsc_gene_9417
|
— | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RHRR,PSRRKKNGKKSDKKINSAASLVNTKKKEEEKLNKQKHQQKGKNNGRKRKEKNKS
|
2-50
|
0.958
|
40-68
|
0.983
|
— | — |
0.001
|
— | — |
0.247
|
0.072
|
0.081
|
0.279
|
0.472
|
0.161
|
0.382
|
0.007
|
0.285
|
0.654
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001739
|
1.000
|
3.000
|
Hsc_gene_18326.t1;Hsc_gene_18326.t2;Hsc_gene_18326.t3
|
Hsc_gene_9414.t1
|
— |
A1C4B8.1 Probable pectate lyase E [Aspergillus clavatus NRRL 1]
|
ADD82848.1 pectate lyase 1 [Heterodera avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0030570
|
GO:0008150_0.957|GO:0003674_0.879|GO:0008152_0.784|GO:0043170_0.784|GO:0044238_0.766|GO:0003824_0.693|GO:0009056_0.688|GO:0009057_0.687|GO:0005975_0.675|GO:0005976_0.675|GO:0000272_0.670|GO:0010393_0.670|GO:0016052_0.670|GO:0045488_0.670|GO:0045490_0.670|GO:0016829_0.650|GO:0016835_0.650|GO:0016837_0.650|GO:0030570_0.650
|
IPR004898+307-472+|IPR011050+324-474+|IPR012334+311-481+
|
— |
PF03211+307-472+Pectate_lyase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
42-154
|
2.000
|
1-41;155-491
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.895
|
54473.440
|
9.420
|
24.500
|
24.236
|
9.572
|
49.898
|
50.102
|
15.071
|
9.165
|
52.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1080.934
|
14.296
|
249.831
|
136.608
|
26.858
|
7.001
|
14.505
|
21.495
|
4184.847
|
1413.979
|
2601.494
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.902
|
3.121
|
-0.763
|
-2.377
|
-1.925
|
1.058
|
1.515
|
— | — |
-4.762
|
-5.262
|
— | — |
No JSON data available for plots.