Hg_chrom1_TN10mRNA_1935
Organism: Heterodera glycines Gene Locus: chr1:16502188-16507986 Feature type: polypeptideProtein Sequence
Length: 249
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.401 | 1.961 | 1.314 | 0.692 | 1.071 | 1.03 | 0.526 | 1.807 | 0.625 | 1.357 | 0.243 | 1.181 | 1.004 | 0.232 | 1.475 | 0.631 | 0.856 | 1.582 | 0.927 | 0.591 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1860
|
— | — |
0.889
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.333
|
0.004
|
0.629
|
0.073
|
0.306
|
0.135
|
0.008
|
0.236
|
0.446
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003110
|
2.000
|
1.000
|
Hsc_gene_18327.t1
|
— | — | — |
WP_175393372.1 ankyrin repeat domain-containing protein [Brevibacillus laterosporus]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.798|GO:0005575_0.744|GO:0110165_0.738|GO:0005622_0.631|GO:0005737_0.631|GO:0065007_0.631|GO:0003674_0.610|GO:0009987_0.597|GO:0071944_0.527|GO:0016020_0.523|GO:0005886_0.505
|
IPR002110+3-32_8-68_37-66_37-69_110-141_146-176_153-224_182-212+|IPR036770+1-81_8-227_89-245+|IPR051165+11-224+
|
SM00248+3-32_37-66_110-141_146-176_182-212+
|
PF12796+8-68_153-224+Ankyrin_repeats_(3_copies)
|
— |
PTHR24123+11-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-249
|
3zuv_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
27784.110
|
4.982
|
-7.500
|
26.104
|
10.442
|
48.193
|
51.807
|
12.450
|
13.655
|
55.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
70.444
|
0.919
|
4.869
|
6.881
|
11.020
|
9.051
|
9.608
|
12.244
|
0.691
|
287.201
|
164.411
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.184
|
2.768
|
— | — | — | — | — | — |
-8.478
|
— |
-4.384
|
— | — |
No JSON data available for plots.