Hg_chrom1_TN10mRNA_1942
Organism: Heterodera glycines Gene Locus: chr1:16554814-16556783 Feature type: polypeptideProtein Sequence
Length: 418
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 2.114 | 0.522 | 0.165 | 1.316 | 1.472 | 0.911 | 0.598 | 0.851 | 0.55 | 1.74 | 2.252 | 0.731 | 1.058 | 1.562 | 1.367 | 0.706 | 0.362 | 1.104 | 0.704 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1864
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_18335
|
Hg_chrom1_TN10mRNA_1942
|
20-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
RPRR,KKEEAPGVENNAKSGKKHR,KVNGKSAKKGKSGGAKKKQKSPIKREIGIIKEIHGKMKNAK
|
— | — | — | — |
1-21
|
0.943
|
0.989
|
0.000
|
0.000
|
0.331
|
0.098
|
0.006
|
0.729
|
0.037
|
0.047
|
0.066
|
0.015
|
0.385
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001087
|
3.000
|
2.000
|
Hsc_gene_18335.t1;Hsc_gene_18336.t1
|
Hsc_gene_18335.t1
|
— | — | — |
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-418
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
47445.300
|
10.770
|
37.500
|
31.100
|
7.656
|
59.809
|
40.191
|
20.335
|
10.766
|
47.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1052.161
|
171.481
|
210.198
|
444.221
|
61.582
|
5.010
|
3.454
|
8.028
|
4320.805
|
1023.609
|
2436.693
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.236
|
1.188
|
-2.882
|
-3.604
|
— | — | — |
1.955
|
-3.114
|
-3.874
|
— | — |