Hg_chrom1_TN10mRNA_1947
Organism: Heterodera glycines Gene Locus: chr1:16598783-16612683 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 1.078 | 0.783 | 0.799 | 0.883 | 1.443 | 0.355 | 0.993 | 1.619 | 1.611 | 0.652 | 1.753 | 1.564 | 1.083 | 1.487 | 0.899 | 0.814 | 0.903 | 1.528 | 0.877 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1870
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
4-27
|
0.948
|
— | — | — | — |
0.000
|
— | — |
0.612
|
0.223
|
0.008
|
0.450
|
0.045
|
0.076
|
0.041
|
0.011
|
0.133
|
0.271
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000371
|
1.000
|
7.000
|
Hsc_gene_18328.t1;Hsc_gene_18328.t2;Hsc_gene_18328.t3;Hsc_gene_18328.t4;Hsc_gene_18328.t5;Hsc_gene_18328.t6;Hsc_gene_18328.t7
|
Hsc_gene_18328.t3;Hsc_gene_18328.t4;Hsc_gene_18328.t5;Hsc_gene_18328.t6
|
— | — |
KAI3411170.1 hypothetical protein GPALN_003253 [Globodera pallida]
|
XP_021287086
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
35162.980
|
8.771
|
9.000
|
23.179
|
12.583
|
44.702
|
55.298
|
13.576
|
9.603
|
42.715
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
88.507
|
124.291
|
73.150
|
49.557
|
44.825
|
24.026
|
107.167
|
47.485
|
3.792
|
207.934
|
120.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.994
|
-1.464
|
-0.453
|
— |
-0.885
|
2.167
|
0.872
|
1.317
|
-5.881
|
3.986
|
— | — | — |
No JSON data available for plots.